View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6026_high_13 (Length: 440)
Name: NF6026_high_13
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 31322671 - 31323091
Alignment:
| Q |
17 |
agaagagcattacgaaatccaacaccaccttcattgtatatataattatttggtggtagattttcagaattcaatgccaactcttgaactgatttattac |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31322671 |
agaagagcatcacgaaatccaacaccaccttcattgtatatataattatttggtggaagattttcaaaattcaatgccaactcttgaactgatttattac |
31322770 |
T |
|
| Q |
117 |
caactatctctacctctgccgacacttccatttttgttattgttattatgatgaaattactaaacaagtaataagaagaagcaataataatcaaactaga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31322771 |
caactatctctacctctgccgacacttccatttttgttattgttattatgatgaaattactaaacaagtaataagaagaagcaataataatcaaactaga |
31322870 |
T |
|
| Q |
217 |
caaaaaccagtgtgttgcacgtttgaatgcagatgctcatcttatgtggtccattgaatatttgacatatatcttacacttatcttatctacagtgtaag |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31322871 |
caaaaaccggtgtgttgcacgtttgaatgcagatgctcatcttatgtggtccattgaatatttgacatatatcttacacttatcttatctacagtgtaag |
31322970 |
T |
|
| Q |
317 |
ataactataagaatcatgctaaaatatgtattaaaagcatttgagattcattgtgacgttggcttgagacattaaagtttactcatctcgaagtctcgta |
416 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31322971 |
ataactataagaatcatgctaaaatatgtcttaaaagcatttgagattcattgtgacgttggcttgagacattaaagtttactcatctcgaagtctcgta |
31323070 |
T |
|
| Q |
417 |
ttagattctttttgtgttgat |
437 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31323071 |
ttagattctttttgtgttgat |
31323091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 31331833 - 31332044
Alignment:
| Q |
17 |
agaagagcattacgaaatccaacaccaccttcattgtatatataattatttggtggtagattttcagaattcaatgccaactcttgaactgatttattac |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31331833 |
agaagagcatcacgaaatccaacaccaccttcattatagatataattatttggtggaagattttcagaattcaatgccaactcttgaactgatttattac |
31331932 |
T |
|
| Q |
117 |
caactatctctacctctgccgacacttccatttttgttattgtta-ttatgatgaaattactaaacaagtaataagaagaagc---aataataatcaaac |
212 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||| | |||||||||| |||||||||||||| |
|
|
| T |
31331933 |
caactatctttacctctgccgacacctccatttttgttattgttatttgtgatgaaatcactaaacaagtcaaaagaagaagcaataataataatcaaac |
31332032 |
T |
|
| Q |
213 |
tagacaaaaacc |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31332033 |
tagacaaaaacc |
31332044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 43977245 - 43977373
Alignment:
| Q |
83 |
gaattcaatgccaactcttgaactgatttattaccaactatctctacctctgccgacacttccatttttgttattgttattatgatgaaattactaaaca |
182 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
43977245 |
gaattcaatgccaactcttgaaccgatttactaccaactatctcaacctctgccgacactt-catttttgttattgttattgtgatgaaatcactaaaca |
43977343 |
T |
|
| Q |
183 |
agtaataagaagaagcaataataatcaaac |
212 |
Q |
| |
|
||| | |||||||||||||| ||||||||| |
|
|
| T |
43977344 |
agtcaaaagaagaagcaatactaatcaaac |
43977373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 54961594 - 54961473
Alignment:
| Q |
17 |
agaagagcattacgaaatccaacaccaccttcattgtatatataattatttggtggtagattttcagaattcaatgccaactcttgaactgatttattac |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| | || ||||||||||||||| || |
|
|
| T |
54961594 |
agaagagcatcacgaaatccaacaccaccttccttgtagatataattatttgatggtagattttcagaatccaacgacagttcttgaactgatttacaac |
54961495 |
T |
|
| Q |
117 |
caactatctctacctctgccga |
138 |
Q |
| |
|
| | ||| || ||||||||||| |
|
|
| T |
54961494 |
cgattatatcaacctctgccga |
54961473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University