View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6026_high_14 (Length: 439)

Name: NF6026_high_14
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6026_high_14
NF6026_high_14
[»] chr1 (14 HSPs)
chr1 (18-418)||(11026294-11026694)
chr1 (18-416)||(11040997-11041395)
chr1 (18-408)||(10930634-10931024)
chr1 (18-416)||(10992838-10993236)
chr1 (54-416)||(10906789-10907148)
chr1 (17-301)||(9495360-9495644)
chr1 (45-304)||(9236146-9236405)
chr1 (198-301)||(9377981-9378084)
chr1 (84-151)||(9056731-9056798)
chr1 (19-74)||(9466702-9466757)
chr1 (132-306)||(8861537-8861711)
chr1 (192-286)||(9337795-9337889)
chr1 (192-286)||(9364654-9364748)
chr1 (192-265)||(9257286-9257359)
[»] chr4 (2 HSPs)
chr4 (33-97)||(27696131-27696195)
chr4 (186-306)||(27696284-27696404)
[»] chr3 (2 HSPs)
chr3 (19-74)||(9171587-9171642)
chr3 (189-241)||(9171757-9171809)
[»] chr6 (3 HSPs)
chr6 (265-306)||(31145387-31145428)
chr6 (265-306)||(31171700-31171741)
chr6 (265-306)||(31189445-31189486)
[»] chr7 (1 HSPs)
chr7 (131-167)||(31439035-31439071)
[»] chr5 (1 HSPs)
chr5 (90-118)||(801258-801286)


Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 11026294 - 11026694
Alignment:
Q  18 gaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaacgcatcctccatttcgatatcaagccacaaaatgtgttacttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11026294 gaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaacgcatcctccatttcgatatcaagccacaaaatgtgttacttg 11026393  T
Q  118 accataactttattccaaaaatatctgactttggtctagctaaattatgttcaagggatcagagcatagtgtcaatgactgcagctagaggaacattggg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11026394 accataactttattccaaaaatatctgactttggtctagctaaattatgttcaagggatcagagcatagtatcaatgactgcagctagaggaacattggg 11026493  T
Q  218 gtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgcttgaaacaataggagga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11026494 gtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgcttgaaacaataggagga 11026593  T
Q  318 aggaagatcacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcata 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11026594 aggaagatcacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatgaagaggaaatgaaaattcata 11026693  T
Q  418 t 418  Q
    |    
T  11026694 t 11026694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 11040997 - 11041395
Alignment:
Q  18 gaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaacgcatcctccatttcgatatcaagccacaaaatgtgttacttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11040997 gaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaacgcatcctccattttgatatcaagccacaaaatgtgttacttg 11041096  T
Q  118 accataactttattccaaaaatatctgactttggtctagctaaattatgttcaagggatcagagcatagtgtcaatgactgcagctagaggaacattggg 217  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  11041097 accacaactttattccaaaaatatgtgattttggtctagctaaattatgttcaagggatcagagcatagtgtcaatgaccgcggctagaggaactttggg 11041196  T
Q  218 gtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgcttgaaacaataggagga 317  Q
     |||||||||||||||||||||||||||||||| ||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||     
T  11041197 ctacattgctccagaagttttttcaaggaactttggaaacgtgtctttcaaatcggatgtttatagttatggaatgatgttgcttgaaacgataggaggg 11041296  T
Q  318 aggaagatcacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcat 416  Q
    | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||    
T  11041297 aagaagatcacagaggatttagaggaaaacagtagtcatgtttactatccggagtggatttataatcttatagatgatgaagaggaaatgagaattcat 11041395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 10930634 - 10931024
Alignment:
Q  18 gaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaacgcatcctccatttcgatatcaagccacaaaatgtgttacttg 117  Q
    |||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||    
T  10930634 gaaattgctttaggtatagctaaaggagttgagtatcttcatcaaggttgtgaccaacgcatcgtccatttcgatatcaaaccacaaaatgtgttacttg 10930733  T
Q  118 accataactttattccaaaaatatctgactttggtctagctaaattatgttcaagggatcagagcatagtgtcaatgactgcagctagaggaacattggg 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |||||    
T  10930734 accataactttattccaaagatatctgactttggtctagctaaattatgttcaagggaccaaagcatagtgtcaatgacagcagctagaggaactttggg 10930833  T
Q  218 gtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgcttgaaacaataggagga 317  Q
     |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  10930834 ctacattgctccagaagttttctcaaggaactttggaaatgtgtcttacaaatcagatgtttatagttatggaatgatgttgcttgaaacaataggaggg 10930933  T
Q  318 aggaagatcacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatga 408  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10930934 aagaagataacagaggacttagaggaaaacagtagtcatgtttactatccggagtggatttataatcttatagatgatcaagaggaaatga 10931024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 10992838 - 10993236
Alignment:
Q  18 gaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaacgcatcctccatttcgatatcaagccacaaaatgtgttacttg 117  Q
    |||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  10992838 gaaattgctttaggtatagctaaaggagttgagtatcttcatcaaggttgtgatcaacgcatccttcattttgatatcaaaccacaaaatgtgttacttg 10992937  T
Q  118 accataactttattccaaaaatatctgactttggtctagctaaattatgttcaagggatcagagcatagtgtcaatgactgcagctagaggaacattggg 217  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||| ||||||||||||||||||||    
T  10992938 accataacttcattccaaaaatatctgactttggtctagctaaattatgttcaagggaccaaagcgtagtttcaatgaccgcagctagaggaacattggg 10993037  T
Q  218 gtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgcttgaaacaataggagga 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  10993038 gtacattgctccagaagttttttcaaggaactttggaaatgtgtcttacaaatcagatgtttatagttatggaatgatgttgcttgaaacaataggaggg 10993137  T
Q  318 aggaagatcacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcat 416  Q
    | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  10993138 aagaaaatcacagaggatttagaggaaaacagtagtcatgtttactatccggaatggatttataaacttatagatgatgaagaggaaatgagaattcat 10993236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 54 - 416
Target Start/End: Original strand, 10906789 - 10907148
Alignment:
Q  54 cttcatcaaggttgtgatcaacgcatcctccatttcgatatcaagccacaaaatgtgttacttgaccataactttattccaaaaatatctgactttggtc 153  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  10906789 cttcatcaaggttgtgatcaacgcatccttcattttgatatcaaaccacaaaatgtgttacttgaccataacttt--tccaaaaatatctgactttggtc 10906886  T
Q  154 tagctaaattatgttcaagggatcagagcatagtgtcaatgactgcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcgg 253  Q
    |||||||||||||||||||||| || ||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10906887 tagctaaattatgttcaagggaccaaagcgtagtttcaatgaccgcagctagaggaacattggggtacattgctccagaagttttttcaaggaactttgg 10906986  T
Q  254 aaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgcttgaaacaataggaggaaggaagatcacagaggacttagaggaaaacagtagt 353  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||     
T  10906987 aaatgtgtcttacaaatcagatgtttatagttatggaatgatgttgcttgaaacaataggagggaagaagataacagaggacttagaggaaaacagtag- 10907085  T
Q  354 catgtttactatccggaatggatttataatcttatagatgatcaagaggaaatgaaaattcat 416  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||||    
T  10907086 catgtttactatccggagtggattgataatcttatagatgatcaagacgaaatgagaattcat 10907148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 9495360 - 9495644
Alignment:
Q  17 agaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaacgcatcctccatttcgatatcaagccacaaaatgtgttactt 116  Q
    |||||||||  | |||||||| ||||||||||| |||||||||||||| ||||| ||  | || || || || ||||| || || || ||| | ||||||    
T  9495360 agaaattgcgcttggaatagcgaaaggaattgagtatcttcatcaaggatgtgaccagaggatacttcactttgatataaaacctcataatatcttactt 9495459  T
Q  117 gaccataactttattccaaaaatatctgactttggtctagctaaattatgttcaagggatcagagcatagtgtcaatgactgcagctagaggaacattgg 216  Q
    ||| ||||||| | ||| || |||||||| |||||||| |||||  | ||||||| |||||| ||    || || ||||| || ||||| || ||  | |    
T  9495460 gacaataacttcactcccaagatatctgattttggtctggctaagctttgttcaaaggatcaaagtgcggtttccatgaccgcggctagggggactattg 9495559  T
Q  217 ggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgct 301  Q
    | ||||| || ||||||||||| || |||||||| ||||||||||| ||||| || |||||||| |||| ||||||| |||||||    
T  9495560 gttacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgtttatagttttggaatgttgttgct 9495644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 304
Target Start/End: Complemental strand, 9236405 - 9236146
Alignment:
Q  45 attgaatatcttcatcaaggttgtgatcaacgcatcctccatttcgatatcaagccacaaaatgtgttacttgaccataactttattccaaaaatatctg 144  Q
    ||||| |||||||||   |||||||||||  | || || || || |||||||| ||||| ||||||||| | ||  |||| || | ||| |||||| | |    
T  9236405 attgagtatcttcatattggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcccaaaataaccg 9236306  T
Q  145 actttggtctagctaaattatgttcaagggatcagagcatagtgtcaatgactgcagctagaggaacattggggtacattgctccagaagttttttcaag 244  Q
    ||||||| || |||||||| ||| | |   | || |||| |||||| ||||||||||| |||||||| ||||| |||||||| || |||||||| || ||    
T  9236305 actttggacttgctaaattgtgtccgaaaaaccaaagcacagtgtctatgactgcagcgagaggaaccttgggatacattgcacctgaagttttctcgag 9236206  T
Q  245 gaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgcttga 304  Q
     |||||||||||||| ||||| || || ||| |||| || || || ||| ||||||||||    
T  9236205 aaacttcggaaatgtttcttataagtctgatatttatagctacggtatgttgttgcttga 9236146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 301
Target Start/End: Original strand, 9377981 - 9378084
Alignment:
Q  198 gcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgt 297  Q
    |||||||||||||||||||| |||||||| || |||||||| ||||| |||||||||||||| |||||||| || ||| |||| || || |||||  |||    
T  9377981 gcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgt 9378080  T
Q  298 tgct 301  Q
    ||||    
T  9378081 tgct 9378084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 9056798 - 9056731
Alignment:
Q  84 catttcgatatcaagccacaaaatgtgttacttgaccataactttattccaaaaatatctgactttgg 151  Q
    ||||| |||||||||||||| ||| |  |||||||| | || ||||||||||| ||||||||||||||    
T  9056798 cattttgatatcaagccacacaatatcctacttgacgagaattttattccaaagatatctgactttgg 9056731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 9466757 - 9466702
Alignment:
Q  19 aaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaa 74  Q
    |||||||| |||| ||||| || |||||||| |||||||| |||||||||||||||    
T  9466757 aaattgctctaggcatagccaatggaattgagtatcttcaccaaggttgtgatcaa 9466702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 306
Target Start/End: Complemental strand, 8861711 - 8861537
Alignment:
Q  132 ccaaaaatatctgactttggtctagctaaattatgttcaagggatcagagcatagtgtcaatgactgcagctagaggaacattggggtacattgctccag 231  Q
    |||||||| || || |||||||| || ||||||||||| | | |||  ||| | ||||| ||||| || ||||  ||||| ||||| ||||| || || |    
T  8861711 ccaaaaatttcggattttggtctcgccaaattatgttccaagaatcttagcgttgtgtccatgacagctgctaagggaaccttgggatacatggcgcctg 8861612  T
Q  232 aagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgcttgaaa 306  Q
    ||||| | ||||| || || || |||||||||   || |||||| |||||||||| |||||| ||||||| ||||    
T  8861611 aagttctatcaagaaattttgggaatgtgtctcttaagtcagatatttacagttacggaatgttgttgctagaaa 8861537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 9337795 - 9337889
Alignment:
Q  192 atgactgcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagtta 286  Q
    |||||||||||||  |||||||| || ||||| || || |||||||||||||| ||||| || ||||| ||||| || || ||| | ||||||||    
T  9337795 atgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatatatacagtta 9337889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 9364654 - 9364748
Alignment:
Q  192 atgactgcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagtta 286  Q
    |||||||||||||  |||||||| || ||||| || || |||||||||||||| ||||| || ||||| ||||| || || ||| | ||||||||    
T  9364654 atgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatatatacagtta 9364748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 9257359 - 9257286
Alignment:
Q  192 atgactgcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtctta 265  Q
    ||||||||||| ||||||||||| || ||||| || || ||||||||||| || ||||| || ||||| |||||    
T  9257359 atgactgcagcgagaggaacattaggatacatggcacccgaagttttttctagaaactttggtaatgtctctta 9257286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 27696131 - 27696195
Alignment:
Q  33 atagctaaaggaattgaatatcttcatcaaggttgtgatcaacgcatcctccatttcgatatcaa 97  Q
    ||||| || |||||||| ||||||||||||||||||||| |||| || |||||||| ||||||||    
T  27696131 atagcgaagggaattgagtatcttcatcaaggttgtgataaacgaattctccattttgatatcaa 27696195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 27696284 - 27696404
Alignment:
Q  186 gtgtcaatgactgcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagtt 285  Q
    |||||||||||  | ||||| ||||| ||||| |||||||| ||||| || ||||| || ||||| || | ||| || || || ||||||||||| ||||    
T  27696284 gtgtcaatgaccacggctaggggaactttgggctacattgcgccagaggtattttctagaaactttggcattgtatcctataagtcagatgtttatagtt 27696383  T
Q  286 atggaatgatgttgcttgaaa 306  Q
    |||| ||| || | |||||||    
T  27696384 atgggatgctgcttcttgaaa 27696404  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 9171587 - 9171642
Alignment:
Q  19 aaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaa 74  Q
    |||||||| |||||||||| || |||||||| ||||| || |||||||||||||||    
T  9171587 aaattgctctaggaatagccaatggaattgagtatctgcaccaaggttgtgatcaa 9171642  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 9171757 - 9171809
Alignment:
Q  189 tcaatgactgcagctagaggaacattggggtacattgctccagaagttttttc 241  Q
    |||||||||||||| ||||||||||| || ||||| || || |||||||||||    
T  9171757 tcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttc 9171809  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 31145428 - 31145387
Alignment:
Q  265 acaaatcagatgtttacagttatggaatgatgttgcttgaaa 306  Q
    ||||||| |||||||| |||||||||||||||||||| ||||    
T  31145428 acaaatctgatgtttatagttatggaatgatgttgctagaaa 31145387  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 31171741 - 31171700
Alignment:
Q  265 acaaatcagatgtttacagttatggaatgatgttgcttgaaa 306  Q
    ||||||| |||||||| |||||||||||||||||||| ||||    
T  31171741 acaaatctgatgtttatagttatggaatgatgttgctagaaa 31171700  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 31189486 - 31189445
Alignment:
Q  265 acaaatcagatgtttacagttatggaatgatgttgcttgaaa 306  Q
    ||||||| |||||||| |||||||||||||||||||| ||||    
T  31189486 acaaatctgatgtttatagttatggaatgatgttgctggaaa 31189445  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 31439035 - 31439071
Alignment:
Q  131 tccaaaaatatctgactttggtctagctaaattatgt 167  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  31439035 tccaaaaatatctgattttggtctagctaaaatatgt 31439071  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 801286 - 801258
Alignment:
Q  90 gatatcaagccacaaaatgtgttacttga 118  Q
    |||||||||||||||||||||||||||||    
T  801286 gatatcaagccacaaaatgtgttacttga 801258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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