View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_16 (Length: 427)
Name: NF6026_high_16
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 44751956 - 44752353
Alignment:
| Q |
18 |
taatatacacatttgatgagagttgacctatgcatgtgccacacacaaaacaaaaggtatatggaaaacatgatacttacccagcacatgcaagtttaaa |
117 |
Q |
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| T |
44751956 |
taatatacacatttgatgagagttgacctatgcatgtgccacacacaaaacaaatgatatatggaaaacatgatacttacccagcacatgcaagtttaaa |
44752055 |
T |
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| Q |
118 |
ttaatttaaataattgaccaaatatgaacaggggaaaaagattcatt-ggcttctcatgtatatacgtatagttactcattgaagacatgttcataatta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44752056 |
ttaatttaaataattgaccaaatatgaacaggggaaaaagattcattaggcttctcatgtatatacgtatagttactgattgaagacatgttcataatta |
44752155 |
T |
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| Q |
217 |
caatttcattcaagtacatgaatcctcattttccctttcttatgtcatttggaaatactcccaacaagtttannnnnnnaatataaggaacaaggaacct |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
44752156 |
taatttcattcaagtacatgaaacctcattttccctttcttatgtcatttggaaatactcc---caagtttatttttttaatataaggaacaaggaacct |
44752252 |
T |
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| Q |
317 |
agttactgtagtaaataaagtgnnnnnnnnnnnnnnnnnnnnnnttgcatttgctcatgaatatataattaatcaatgatatgatcttatatttgcctat |
416 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44752253 |
agttactgtagtaaataaagtgaaaaaaaatgaaaaggaaaaaattgcatttgctcatgaatatataattaatcaatgatatgatcttatatttgcctat |
44752352 |
T |
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