View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_17 (Length: 406)
Name: NF6026_high_17
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 40328081 - 40328467
Alignment:
| Q |
1 |
ttcttgatatctagcattttccttacaatacactcgtaatcggttgaaattcattttttaacagattttttataaactccaaatgcattagtagggnnnn |
100 |
Q |
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| T |
40328081 |
ttcttgatatctagcattttccttacaatacactcgtaatcggttgaaattcattttttaacagattttttataaactccaaatgcattagtaggaaaaa |
40328180 |
T |
|
| Q |
101 |
nnnnn-cttttatgaaacaaaaatagtaggaaaaagatctcaaaactaatttaatacatgctcaaactaactatgagggatgcatgaagaaaaccatagg |
199 |
Q |
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| T |
40328181 |
aaatatcttttatgaaacaaaaatagtaggaaaaagatctcaaaactaatttaatacatgctcaaactaactatgagggatgcatgaagaaaaccatagg |
40328280 |
T |
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| Q |
200 |
ttaagaaaatggaacaacacacaacagcttgaaatcaaaagtaattaatcaaacgtaatnnnnnnnnnnnnnggcactagtattgaattggctttgtcac |
299 |
Q |
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| T |
40328281 |
ttaagaaaatggaacaacacacaacagcttgaaatcaaaagtaattaatcaaacgtaataaaaaaaaaaa---gcactagtattgaattggctttgtcac |
40328377 |
T |
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| Q |
300 |
aatcccttaaacaaacacttccttcctgtgccactcagaaagttacacatccacaaacctaaaatagaatggtcatctattacttttctt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40328378 |
aatcccttaaacaaacacttccttcctgtgccactcagaaagttacacatccacaaacctaaaatagaatggtcatctattacttttctt |
40328467 |
T |
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