View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_18 (Length: 403)
Name: NF6026_high_18
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 41 - 225
Target Start/End: Complemental strand, 13888678 - 13888494
Alignment:
| Q |
41 |
tagctcaaagtgatgacatcaaaatctctaatataaaatttgaatttcttctcatatcatattgaactaatatctttctctccacttgttttgttgtttg |
140 |
Q |
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| T |
13888678 |
tagctcaaagtgatgacatcaaaatctctaatataaaattcgaatttcttctcatatcatattgaactactatctttctctccacttgttttgttgtttg |
13888579 |
T |
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| Q |
141 |
cacgatcctatttgcgaaatgagtggcacttaatgaatggcctttaagactcggaggagaaaaatgtttttattcgacaattaag |
225 |
Q |
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| T |
13888578 |
cacgatcctatttacgaaatgagtggcacttaatgaatggcctttaagactcggaggagaaaaatgtttttattcgagaattaag |
13888494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 221 - 390
Target Start/End: Complemental strand, 13887236 - 13887069
Alignment:
| Q |
221 |
ttaagtctaatgattttattttatgatcacatagttcaactaagatatgtttgtggagagagaatcaacannnnnnnaatttattccatttatggaaaaa |
320 |
Q |
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| T |
13887236 |
ttaagtctaatgattttattttaggatcacatagttgaactatgatacaattgtggagagagaat-aacagttttt-aatttaatccatttatggaaaaa |
13887139 |
T |
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| Q |
321 |
tatgtttattgttgttcgaacgtatcgactatatgtgatgtgtgagatgaccaattcatcaacatgttga |
390 |
Q |
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| T |
13887138 |
tatgtttattgttgttcgaacgtatcgactacatgtgatgtgtgagatgaccaattcatcaacatgttga |
13887069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 13888745 - 13888708
Alignment:
| Q |
5 |
ggacatcatcagaaagcatcatttgccaacatgagcta |
42 |
Q |
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| T |
13888745 |
ggacctcatcggaaagcatcatttgccaacatgagcta |
13888708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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