View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_20 (Length: 398)
Name: NF6026_high_20
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 49294237 - 49294030
Alignment:
| Q |
11 |
cacagagctagtcgactaagatccgaattttgcacgacgaactatcttataaattttcggcattcaaaaacaagaagcttactggaaatgtttaattcaa |
110 |
Q |
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| T |
49294237 |
cacagagctagtcgactaagatccgaattttgcacgacgaactatcttataaattttcggcattcaaaaacaagaagcttactggaaatgtttaattcaa |
49294138 |
T |
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| Q |
111 |
acatgtnnnnnnnnnnngtttaatttgatgtgtaattcttttttaatataccaaattaatatatctaattaagttacaacaaaatctacattataagaaa |
210 |
Q |
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| T |
49294137 |
acatgt--aaaaaaaaagtttaatttgatgtgtaattcttttttaatataccaaattaatatatctaattaagttacaacaaaatctacattataagaaa |
49294040 |
T |
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| Q |
211 |
cctttactct |
220 |
Q |
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|||||||||| |
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| T |
49294039 |
cctttactct |
49294030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 251 - 383
Target Start/End: Complemental strand, 49293990 - 49293858
Alignment:
| Q |
251 |
cctttacttcttgaaataaatctttactatatatttatctatttatttataagttttaaaaatattccagggaatgatctaaataacgaatatacgcagc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49293990 |
cctttacttcttgaaataaatctttactatatatttatctatttatttataagttttaaaaatattccagggaatgatctaaataacgaatatacgcagc |
49293891 |
T |
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| Q |
351 |
tttgtgcttggctgtcttgttgattgttgatat |
383 |
Q |
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| T |
49293890 |
tttgtgcttggctgtcttgttgattgttgatat |
49293858 |
T |
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