View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6026_high_22 (Length: 362)

Name: NF6026_high_22
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6026_high_22
NF6026_high_22
[»] chr1 (4 HSPs)
chr1 (9-346)||(45114640-45114978)
chr1 (58-103)||(6668251-6668295)
chr1 (58-103)||(9775029-9775073)
chr1 (57-93)||(49663541-49663577)
[»] chr8 (4 HSPs)
chr8 (58-103)||(24459444-24459489)
chr8 (58-103)||(14529694-14529739)
chr8 (60-103)||(24458724-24458767)
chr8 (58-99)||(37871826-37871867)
[»] chr6 (2 HSPs)
chr6 (58-103)||(7385801-7385846)
chr6 (55-103)||(3816704-3816752)
[»] chr5 (3 HSPs)
chr5 (58-103)||(294314-294359)
chr5 (58-103)||(14212452-14212496)
chr5 (58-102)||(293134-293177)
[»] chr2 (2 HSPs)
chr2 (58-103)||(34384821-34384866)
chr2 (58-103)||(29099701-29099745)
[»] chr7 (1 HSPs)
chr7 (60-103)||(24812985-24813028)
[»] chr3 (2 HSPs)
chr3 (61-103)||(27988410-27988451)
chr3 (55-103)||(5303698-5303746)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 346
Target Start/End: Complemental strand, 45114978 - 45114640
Alignment:
Q  9 acatcatcaaaattacactatcagcgtgtcacatcgtcaaaattatatgagggtctaaaacgaaagaatcttaatattacagggttgaaatctaannnnn 108  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||         
T  45114978 acatcatcaaaattacactgtcaacgtgtcacatcgtcaaaattatatgagggtttaaaacgaaagaatcttaatattacagggttgaaatttaaacttt 45114879  T
Q  109 nnnn-acagggggtaaaccaaaactcgcctatatgtaaagacatattaaccctttaaattaaaaagcataataataaaatccctcacgacgccgtggata 207  Q
         |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45114878 tttttacagggagtaaaccaaaactcgcctatatgtaaagacatagtaaccctttaaattaaaaagcataataataaaatccctcacgacgccgtggata 45114779  T
Q  208 atttgcaggttctgagagatgattttgaatccatttatatggaggagtttaggagtaataatattatcaagagaggacttctataacattatagtgaaat 307  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45114778 atttgcaggttctgagatatgattttgaatccatttatatggaggagtttaggagtaataatattatcaagagaggacttatataacattatagtgaaat 45114679  T
Q  308 gtggaagaaaatagacattgactaatgagcagaaaaagc 346  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45114678 gtggaagaaaatagacattgactaatgagcagaaaaagc 45114640  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 6668251 - 6668295
Alignment:
Q  58 agggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||    
T  6668251 agggtctaaaacgaaagaatcttaa-attacagggttggaatctaa 6668295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 9775073 - 9775029
Alignment:
Q  58 agggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||    
T  9775073 agggtctaaaacgaaagaatcttaa-attacagggttggaatctaa 9775029  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 49663577 - 49663541
Alignment:
Q  57 gagggtctaaaacgaaagaatcttaatattacagggt 93  Q
    |||||||||||||||||||||||| | ||||||||||    
T  49663577 gagggtctaaaacgaaagaatcttcaaattacagggt 49663541  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 24459444 - 24459489
Alignment:
Q  58 agggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  24459444 agggtctaaaacgaaagaatcttcatattacagggttcaaatctaa 24459489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 14529739 - 14529694
Alignment:
Q  58 agggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    ||||||||||||||||||||||| | |||||||||||| |||||||    
T  14529739 agggtctaaaacgaaagaatcttcaaattacagggttggaatctaa 14529694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 24458767 - 24458724
Alignment:
Q  60 ggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||    
T  24458767 ggtctaaaacgaaagaatcttcatattacatggttaaaatctaa 24458724  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 37871826 - 37871867
Alignment:
Q  58 agggtctaaaacgaaagaatcttaatattacagggttgaaat 99  Q
    ||||||||||||||||||||||| | |||||| |||||||||    
T  37871826 agggtctaaaacgaaagaatcttcaaattacaaggttgaaat 37871867  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 7385846 - 7385801
Alignment:
Q  58 agggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||    
T  7385846 agggtctaaaacgaaagaatcttcatattacaatgttgaaatctaa 7385801  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 3816704 - 3816752
Alignment:
Q  55 atgagggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    |||| |||| ||||| |||||||||| | ||||||||||||||||||||    
T  3816704 atgaaggtcaaaaaccaaagaatcttcaaattacagggttgaaatctaa 3816752  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 294314 - 294359
Alignment:
Q  58 agggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    ||||||||||||||||||||||| | ||||||||||||| ||||||    
T  294314 agggtctaaaacgaaagaatcttcaaattacagggttgagatctaa 294359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 14212496 - 14212452
Alignment:
Q  58 agggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||    
T  14212496 agggtctaaaacgaaagaatcttaa-attacaaggttggaatctaa 14212452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 293177 - 293134
Alignment:
Q  58 agggtctaaaacgaaagaatcttaatattacagggttgaaatcta 102  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||    
T  293177 agggtctaaaacgaaagaatcttaa-attacatggttggaatcta 293134  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 34384866 - 34384821
Alignment:
Q  58 agggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    |||||||||||||||| |||||| |||| |||||||||||||||||    
T  34384866 agggtctaaaacgaaataatctttatataacagggttgaaatctaa 34384821  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 29099701 - 29099745
Alignment:
Q  58 agggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    ||||||||||| ||||||||||||| |||||||||||||| |||||    
T  29099701 agggtctaaaatgaaagaatcttaa-attacagggttgaattctaa 29099745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 24812985 - 24813028
Alignment:
Q  60 ggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    |||||||||| |||||||||| | ||||||||||||||||||||    
T  24812985 ggtctaaaaccaaagaatcttcaaattacagggttgaaatctaa 24813028  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 27988451 - 27988410
Alignment:
Q  61 gtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  27988451 gtctaaaacgaaagaatcttaa-attacagggttggaatctaa 27988410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 5303698 - 5303746
Alignment:
Q  55 atgagggtctaaaacgaaagaatcttaatattacagggttgaaatctaa 103  Q
    |||| |||||||||| |||||||||| | |||||||||||| |||||||    
T  5303698 atgaaggtctaaaaccaaagaatcttcaaattacagggttggaatctaa 5303746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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