View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_25 (Length: 340)
Name: NF6026_high_25
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 38033583 - 38033270
Alignment:
| Q |
19 |
taatcataatgacagaatgcattcaataactcaatcagctcctatgtgcttctatttataaattataaaactagtgattccttgaaatnnnnnnnnnnnn |
118 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38033583 |
taataataatgacagaatccattcaataactcaatcagctcctatgtgcttctatttataaattataaaactggtgattccttgaaataaagaaaaagaa |
38033484 |
T |
|
| Q |
119 |
nnnnnnntatcgaacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaattt |
218 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38033483 |
aaagaaatatcgaacaatatctaaattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaattt |
38033384 |
T |
|
| Q |
219 |
ctctggcctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaannnnnnnacatgtccattgcttctatcaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38033383 |
ctctggcctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaa |
38033284 |
T |
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| Q |
319 |
ctgcttcttcatct |
332 |
Q |
| |
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|||||||||||||| |
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|
| T |
38033283 |
ctgcttcttcatct |
38033270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 38028549 - 38028236
Alignment:
| Q |
19 |
taatcataatgacagaatgcattcaataactcaatcagctcctatgtgcttctatttataaattataaaactagtgattccttgaaatnnnnnnnnnnnn |
118 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||| ||| |
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| T |
38028549 |
taatcataataacagaatgcattcaataactcaattagctcctatgtgcttgtatttataaatgataaaacagacgattccttaaaagaaagaaaaagaa |
38028450 |
T |
|
| Q |
119 |
nnnnnnntatcgaacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaattt |
218 |
Q |
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| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38028449 |
aaagaaattacgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaattt |
38028350 |
T |
|
| Q |
219 |
ctctggcctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaannnnnnnacatgtccattgcttctatcaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38028349 |
ctctggcctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaa |
38028250 |
T |
|
| Q |
319 |
ctgcttcttcatct |
332 |
Q |
| |
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|||||||||||||| |
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| T |
38028249 |
ctgcttcttcatct |
38028236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 289
Target Start/End: Original strand, 50910450 - 50910577
Alignment:
| Q |
155 |
tataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggcctaataataaaacattcagccaaattata |
254 |
Q |
| |
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||||||||||||||||| | || | ||||||| ||| ||||||| | ||||||||||||||||||| |||||||| |||||||||||||||| || | |
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| T |
50910450 |
tataatgatgacataagagaatgtgctgtaagcaatatcgagct-cgaatattcctgcaaatttct--ggcctaat---aaaacattcagccaaactaaa |
50910543 |
T |
|
| Q |
255 |
atagttgataggttatcttagatctaagctcacaa |
289 |
Q |
| |
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||||||||| | |||||| ||||||||||||||| |
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| T |
50910544 |
gtagttgataag-tatcttggatctaagctcacaa |
50910577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 38039865 - 38039782
Alignment:
| Q |
19 |
taatcataatgacagaatgcattcaataactcaatcagctcctatgtgcttctatttataaattataaaactagtgattccttg |
102 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||| || |||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
38039865 |
taatcataatgacaaaaggcattcaacaactcaacgagttcctatacgcttctatttataaattataaaacaggtgattccttg |
38039782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 289
Target Start/End: Complemental strand, 38036444 - 38036314
Alignment:
| Q |
154 |
ttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggcctaataataaaacattcagccaaattat |
253 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||| | | ||||| | | |||||||||||||||||||||| | ||||||| ||||||||||||| ||| |
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| T |
38036444 |
ttataatgatgagataagggtatgtgctgtaagcagtatcgagat-cgaatattcctgcaaatttctctgac---ataataacacattcagccaaactat |
38036349 |
T |
|
| Q |
254 |
aatagttgataggttatcttagatctaagctcacaa |
289 |
Q |
| |
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||||| ||| | |||||| |||| |||||||||| |
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| T |
38036348 |
-atagtgtataagctatcttggatcaaagctcacaa |
38036314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 38036571 - 38036487
Alignment:
| Q |
18 |
ataatcataatgacagaatgcattcaataactcaatcagctcctatgtgcttctatttataaattataaaactagtgattccttg |
102 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||||| | |||||| |||||||||||||| | |||||| | ||||||||||| |
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| T |
38036571 |
ataatcataatgaaagaatacattcaacaactcaattggatcctatatgcttctatttatatactataaatttggtgattccttg |
38036487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 21604537 - 21604224
Alignment:
| Q |
19 |
taatcataatgacagaatgcattcaataactcaatcagctcctatgtgcttctatttataaattataaaactagtgattccttgaaatnnnnnnnnnnnn |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||| ||| |
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| T |
21604537 |
taatcataataacagaatgcattcaataactcaattagctcctatgtgcttgtatttataaatgataaaacagacgattccttaaaagaaagaaaaagaa |
21604438 |
T |
|
| Q |
119 |
nnnnnnntatcgaacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaattt |
218 |
Q |
| |
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| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21604437 |
aaagaaattacgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaattt |
21604338 |
T |
|
| Q |
219 |
ctctggcctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaannnnnnnacatgtccattgcttctatcaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21604337 |
ctctggcctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaa |
21604238 |
T |
|
| Q |
319 |
ctgcttcttcatct |
332 |
Q |
| |
|
|||||||||||||| |
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|
| T |
21604237 |
ctgcttcttcatct |
21604224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 21609583 - 21609500
Alignment:
| Q |
19 |
taatcataatgacagaatgcattcaataactcaatcagctcctatgtgcttctatttataaattataaaactagtgattccttg |
102 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||| || |||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
21609583 |
taatcataatgacaaaaggcattcaacaactcaacgagttcctatacgcttctatttataaattataaaacaggtgattccttg |
21609500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 21607075 - 21606992
Alignment:
| Q |
19 |
taatcataatgacagaatgcattcaataactcaatcagctcctatgtgcttctatttataaattataaaactagtgattccttg |
102 |
Q |
| |
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|||||||||||||| | | ||||||| ||||||| |||| ||| ||||||||||||||| ||| ||||||| ||||| |||| |
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| T |
21607075 |
taatcataatgacacactacattcaacaactcaaagggctcttatatgcttctatttataagttacaaaactaatgattacttg |
21606992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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