View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_3 (Length: 758)
Name: NF6026_high_3
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 24 - 734
Target Start/End: Complemental strand, 13886904 - 13886191
Alignment:
| Q |
24 |
atagaagctagcaaagaagatgagaatccacaacactaccaatgaaacttt--actcatttatacaaattccactacatttttcctctctataaccaatg |
121 |
Q |
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||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13886904 |
atagaagttagcaaagaagatgagaatccagaacagcaccaatgaaactttttactcatttatacaaattccactacatttttcctctctataaccaatg |
13886805 |
T |
|
| Q |
122 |
agtgccnnnnnnngttacaagactagaaagtagacacaactacttccatcgagaataatactaaacatagcgaatgaatgactcactaaaatgtatattc |
221 |
Q |
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| T |
13886804 |
-gtgccttttatttttacaagaccagaaagtagacataactacttccatcgaaaaaaatactaaacatagcgaatgaatgactcattaaaatgtatattc |
13886706 |
T |
|
| Q |
222 |
gtatgattaaaatattcttatctaaaactcatttatcttctatatacaaatgcattgatatacactttacaaaaggagatgagatgatttgtttttgcaa |
321 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13886705 |
gtatgattaaaatatttgtatctaaaactcatttatcttttatatacaaatgcattgatatacactttatcaaaggagatgagatgatttgtttttgcaa |
13886606 |
T |
|
| Q |
322 |
aaaataccatatataaatttgctcatgtttatcaacacatttgcttttcgaaaatttggagaacattatttgcttatatcttctattctcggcaaaataa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13886605 |
aaaataccatatataaatttgctcatgtttatcaacacatttgcttttcgaaaatttggagaacattatttgcttatatcttctattctcggcaaaataa |
13886506 |
T |
|
| Q |
422 |
cttatcttttactttggaatttatctca--ataattttatttttcaaacaatttacactgatctataatgatttagttgcagtcataatctcaacaaact |
519 |
Q |
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|||||||||||||||||||| |||||| |||| |||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
13886505 |
tttatcttttactttggaattcatctcaatataactttattttacagacaatttacacttatctacaatgatttagttgcagtcataatctcaacaaact |
13886406 |
T |
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| Q |
520 |
tctttttccacaaaccattcttattcaccatcttttgaacaataggacttgttctagtgtcattaatcaaatgaccatatgtaatcaaaccgttttgttc |
619 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13886405 |
tctgtttccacaaaccattcttattcaccatcttttgaacaatatgacttgttctagtgtcattaatcaaatgaccatatgtaatcaaaccgttttgttc |
13886306 |
T |
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| Q |
620 |
tctatcgtcaccatattcttgtaaaataagttataaaaaaccgttgttgtttcatcaaaatttatcaatggattttcaaactgctattaaattgagaaaa |
719 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13886305 |
tctatcgtcaccatattcttataaaataagttataaaaaactgttgttgtttcatcaaaatttatcaatggattttcaaactgctattaaattgagaaaa |
13886206 |
T |
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| Q |
720 |
gaaaatgagatttag |
734 |
Q |
| |
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||||||||||||||| |
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| T |
13886205 |
gaaaatgagatttag |
13886191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 30224423 - 30224363
Alignment:
| Q |
293 |
aaaggagatgagatgatttgtttttgcaaaaaataccatatataaatttgctcatgtttat |
353 |
Q |
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|||| |||||||||||||| ||||||| || | | ||||||||||||||||||||||||| |
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| T |
30224423 |
aaagaagatgagatgatttacttttgcataagacatcatatataaatttgctcatgtttat |
30224363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 728
Target Start/End: Complemental strand, 13139492 - 13139433
Alignment:
| Q |
669 |
tttcatcaaaatttatcaatggattttcaaactgctattaaattgagaaaagaaaatgag |
728 |
Q |
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||||||||||| ||||||| ||||||||||| || |||| |||||||| |||||||||| |
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| T |
13139492 |
tttcatcaaaacttatcaacggattttcaaaatgttattgaattgagaggagaaaatgag |
13139433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 408
Target Start/End: Original strand, 3380746 - 3380855
Alignment:
| Q |
297 |
gagatgagatgatttgtttttgcaaaaaataccat--atataaatttgctcatgtttatcaacacatttgcttttcgaaaatttggagaacattatttgc |
394 |
Q |
| |
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|||||||||||||||||||||| | || | ||||| ||||||||||| || ||||| | ||||||| |||||| |||||||||| ||||| |||| |
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| T |
3380746 |
gagatgagatgatttgtttttgtagaagacaccatgtatataaatttgt--atatttat--atacatttgtatttcgagaatttggagagcattagttgc |
3380841 |
T |
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| Q |
395 |
ttatatcttctatt |
408 |
Q |
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|||||||||||||| |
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| T |
3380842 |
ttatatcttctatt |
3380855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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