View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6026_high_35 (Length: 258)
Name: NF6026_high_35
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 44875380 - 44875138
Alignment:
| Q |
1 |
agaggaccgcgttacaaaattaataaaagatataatagagtcaggtgaatacattttagcaaaaatattatgataagagttgtgttaatatatgtgtggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44875380 |
agaggaccgcgttacaaaattaataaaagatataatagagtcaggtgaatacattttagcaaaaatattatgataagagttgtgttaatatatgtgtggc |
44875281 |
T |
|
| Q |
101 |
acactacaagaggattgttttagctcatcagtttacactccttgcaggtgatgtcattcttttcattgacgaagttcacacacttgttcaatcagggaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44875280 |
acactacaagaggattgttttagctcatcagtttacactccttgcaggtgatgtcattcttttcattgacgaagttcacacacttgttcaatcagggaca |
44875181 |
T |
|
| Q |
201 |
accgggaggggaaataagggctctggctttgacattgctaatt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44875180 |
accgggaggggaaataagggctctggctttgacattgctaatt |
44875138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University