View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_38 (Length: 254)
Name: NF6026_high_38
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_38 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 12030889 - 12031142
Alignment:
| Q |
1 |
taactactatggttatagcaaaggagccattattttagcttggcaaagatgcttgagttagccaagagatgttggtccaatcaataagtaattcgttcat |
100 |
Q |
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| T |
12030889 |
taactactatggttatagcaaaggagccatcattttagcttggcaaagatgcttgagttagccaagagatgttggtccaatcaataagtatttcgttcat |
12030988 |
T |
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| Q |
101 |
attttagaaaggtgtaagttcaactcccgtttaaaaacctaattgtaaataaattgatgcgttctcggacacaactcctctaaaattttatttnnnnnnn |
200 |
Q |
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| T |
12030989 |
attttagaaaggtgtaagttcaactccggtttaaaaaccttattgtaaataaattgatgcgttctcggacacaactcctctaaaattttatttaaaataa |
12031088 |
T |
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| Q |
201 |
nnnnnnnnnttcatgtttgaaatatcaaatgatgattgatttattgattaatta |
254 |
Q |
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| T |
12031089 |
aaataaaaattcatgtgtgaaatatcaaatgttgtttgatttattgattaatta |
12031142 |
T |
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