View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_40 (Length: 251)
Name: NF6026_high_40
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 34411857 - 34412100
Alignment:
| Q |
1 |
aaaaaataataaaaatattgacaaattgcaccacctattctctatctacaaatactgactgatcatttgagatgacaaatcagctgagagcatgagggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
34411857 |
aaaaaataataaaaatattgacaaattgcaccacctattctctatctacaaatactgactgatcatttgagatggcaaatcagctgagaacatgagggtg |
34411956 |
T |
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| Q |
101 |
tgatagaaactaggtaaaagacaagggtaaggtggtaataacacacctatattgcttctctcccctctttcttcttaaaccagtgaag-nnnnnnnngag |
199 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| |
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| T |
34411957 |
tgatagaaactaggtaaaagacaagagtaaggtggtaataacacacatatattgcttctctcccctctttcttctcaaaccagcgaagaaacaaaaagag |
34412056 |
T |
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| Q |
200 |
gtgggacccatggctttttaatctgtctcccgtgtttctctgct |
243 |
Q |
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| T |
34412057 |
gtgggacccatggctttttaatctgtctcccgtgtttctctgct |
34412100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 10616812 - 10616569
Alignment:
| Q |
1 |
aaaaaataataaaaatattgacaaattgcaccacctattctctatctacaaatactgactgatcatttgagatgacaaatcagctgagagcatgagggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
10616812 |
aaaaaataataaaaatattgacaaattgcaccacctattctctatctacaaatactgactgatcatttgagatggcaaatcagctgagaacatgagggtg |
10616713 |
T |
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| Q |
101 |
tgatagaaactaggtaaaagacaagggtaaggtggtaataacacacctatattgcttctctcccctctttcttcttaaaccagtgaag-nnnnnnnngag |
199 |
Q |
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| T |
10616712 |
tgatagaaactaggtaaaagacaagagtaaggtggtaataacacacatatattgcttctctcccctctttcttctcaaaccagcgaagaaacaaaaagag |
10616613 |
T |
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| Q |
200 |
gtgggacccatggctttttaatctgtctcccgtgtttctctgct |
243 |
Q |
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| T |
10616612 |
gtgggacccatggctttttaatctgtctcctgtgtttctctgct |
10616569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 29732806 - 29732551
Alignment:
| Q |
1 |
aaaaaataataaaaatattgacaaattgcaccacctattctctatctacaaatactgac-----------tgatcatttgagatgacaaatcagctgaga |
89 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |
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| T |
29732806 |
aaaaaataataaaaatattgacaaattgcaccacctattctctatctacaaatactgaccaaggcatgaatgatcatttgagatggcaaatcagctggga |
29732707 |
T |
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| Q |
90 |
gcat-gagggtgtgatagaaactaggtaaaagacaagggtaaggtggtaataacacacctatattgcttctctcccctctttcttcttaaaccagtgaag |
188 |
Q |
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|||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
29732706 |
gcattgagggtgtgatagaaactagataaaagacaagggcaaggtggtaataacacacatatattgcttctctcccctctttcttctcaaaccagtgaag |
29732607 |
T |
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| Q |
189 |
-nnnnnnnngaggtgggacccatggctttttaatctgtctcccgtgtttctctgct |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29732606 |
aaacaaaaagaggtgggacccatggctttttaatctgtctcccttgtttctctgct |
29732551 |
T |
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