View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_41 (Length: 248)
Name: NF6026_high_41
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23576384 - 23576145
Alignment:
| Q |
1 |
cgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23576384 |
cgccttgggaactggtgctgtagaagattccagcaggcttaccggcaagctgttgtgttttccatagtccaccagttgcatctagaaaggctttaaactg |
23576285 |
T |
|
| Q |
101 |
agcagccatcattccaaatcttgttggaaatccaaagacaaaaccgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23576284 |
agcagccatcattccaaatcttgttggaaatccaaagacaaaaccatcaccttcggttagttcattcggggtaatgattggtacatcactcttgggtggt |
23576185 |
T |
|
| Q |
201 |
gctctcatcttaccaagcacttcttccgccaatatctctg |
240 |
Q |
| |
|
||||||||||||||||| || ||||| | |||||| |||| |
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| T |
23576184 |
gctctcatcttaccaagtacctcttctggcaatatttctg |
23576145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 23595954 - 23595738
Alignment:
| Q |
1 |
cgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactg |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||| |
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| T |
23595954 |
cgccttgggaactgatgctgtagaagattccggcaggcttccctgcaagctgttgcgttttccagagaccaccaattgcatctataaaggctttaaacta |
23595855 |
T |
|
| Q |
101 |
agcagccatcattccaaatcttgttggaaatccaaagacaaaaccgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23595854 |
agcagccatcattccaaatcttgttggaaatccaaagaaaaaaccatcaccttcagttagttcattcggggtaatgattggtacatcactcttgggtggt |
23595755 |
T |
|
| Q |
201 |
gctctcatcttaccaag |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
23595754 |
gctctcatcttaccaag |
23595738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 23604876 - 23604660
Alignment:
| Q |
1 |
cgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactg |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||| |
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| T |
23604876 |
cgccttgggaactgatgctgtagaagattccggcaggcttccctgcaagctgttgcgttttccagagaccaccaattgcatctataaaggctttaaacta |
23604777 |
T |
|
| Q |
101 |
agcagccatcattccaaatcttgttggaaatccaaagacaaaaccgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23604776 |
agcagccatcattccaaatcttgttggaaatccaaagaaaaaaccatcaccttcagttagttcattcggggtaatgattggtacatcactcttgggtggt |
23604677 |
T |
|
| Q |
201 |
gctctcatcttaccaag |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
23604676 |
gctctcatcttaccaag |
23604660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23590691 - 23590454
Alignment:
| Q |
1 |
cgccttgggaactggtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactg |
100 |
Q |
| |
|
||||||||||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
23590691 |
cgccttgggaactagtgttgtagaagattctggcaggcttccctacaagctgttgtgttttccaaagaccaccagttgcatctagaaaggctttaaattg |
23590592 |
T |
|
| Q |
101 |
agcagccatcattccaaatcttgttggaaatccaaagacaaaaccgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||| | || ||||||||| |||||||||| |
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| T |
23590591 |
agcagccatcattccaaatcttgttggaaatccaaagacaaaaccatcaccctcagaaagctcattgggggtagtaattggtacatca--cttgggtggt |
23590494 |
T |
|
| Q |
201 |
gctctcatcttaccaagcacttcttccgccaatatctctg |
240 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||||| |||| |
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| T |
23590493 |
gctctcatctttccaagtacttcgtctgccaatatttctg |
23590454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 23564476 - 23564535
Alignment:
| Q |
30 |
ccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaag |
89 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||| | ||||||||| |
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|
| T |
23564476 |
ccggcaggcttccctgcaagctgtcctgttttccatagacctacagtttcttctagaaag |
23564535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 34339724 - 34339519
Alignment:
| Q |
15 |
gtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattc |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||| |||||| | ||||||||| ||||| ||||| ||||| || |||||||||||||||| |
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| T |
34339724 |
gtgctgtagaagattccggcaggcttgcctgcaagcgattgtgctttccacaaaccaccagtagcatcaagaaaagctttgaattgagcagccatcattc |
34339625 |
T |
|
| Q |
115 |
caaatcttgttggaaatccaaagacaaaaccgtcaccctcagagagttcattcggggtaatgatcggtacatcactcttgggtggtgctctcatcttacc |
214 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||||||||| |||||||| || || |||| ||||||||||||||||||||||| |||||||| || |
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|
| T |
34339624 |
caaatcttgttgggaagccaaagacaaaaccatcaccctcagacagttcatttggtgtgatgagtggtacatcactcttgggtggtgcactcatctttcc |
34339525 |
T |
|
| Q |
215 |
aagcac |
220 |
Q |
| |
|
|||||| |
|
|
| T |
34339524 |
aagcac |
34339519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 2649414 - 2649524
Alignment:
| Q |
15 |
gtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattc |
114 |
Q |
| |
|
|||||||| ||||| || |||||||| |||||||| | ||||| |||||| | ||||||| ||| | ||| ||||| || |||| ||||||||||| |
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|
| T |
2649414 |
gtgctgtaaaagatgccagcaggctttcctgcaagtttctgtgtgcaccataggtctccagttgtatccataaatgctttgaattgagtagccatcattc |
2649513 |
T |
|
| Q |
115 |
caaatcttgtt |
125 |
Q |
| |
|
||||||||||| |
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|
| T |
2649514 |
caaatcttgtt |
2649524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 2645619 - 2645731
Alignment:
| Q |
33 |
gcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttgttggaaatc |
132 |
Q |
| |
|
|||||||| |||||||| |||| | ||||||| || ||||||||||| | ||| |||| || ||||||| |||||||||| |||||| |||||| | |
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|
| T |
2645619 |
gcaggctttcctgcaagtgtttgtttgttccataaacttccagttgcatcaaaaaatactttgaattgagcagacatcattccatatcttgctggaaaac |
2645718 |
T |
|
| Q |
133 |
caaagacaaaacc |
145 |
Q |
| |
|
|||| | |||||| |
|
|
| T |
2645719 |
caaacaaaaaacc |
2645731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 36461818 - 36461709
Alignment:
| Q |
15 |
gtgctgtagaagattccggcaggcttccctgcaagctgttgtgttttccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattc |
114 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||| || || |||||| |||||||||||||| | || ||||||||||||||||||||||||| |
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|
| T |
36461818 |
gtgctgtaaaagattcctgcaggctttcctgcaagtgcctgagtacgccataggccaccagttgcatccaagaatgctttaaactgagcagccatcattc |
36461719 |
T |
|
| Q |
115 |
caaatcttgt |
124 |
Q |
| |
|
|||||||||| |
|
|
| T |
36461718 |
caaatcttgt |
36461709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 36455400 - 36455339
Alignment:
| Q |
62 |
ccatagaccaccagttgcatctagaaaggctttaaactgagcagccatcattccaaatcttg |
123 |
Q |
| |
|
|||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||| |
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|
| T |
36455400 |
ccataggccaccagttgcatccaagaatgctttaaactgagcagccatcattccaaatcttg |
36455339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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