View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_47 (Length: 239)
Name: NF6026_high_47
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 44875594 - 44875831
Alignment:
| Q |
1 |
caatagaaaaggagcaacttctgcgcgagaaataagaattgccagtccctccgcaatagctgttttcccaactccagcttcacccagaagaattggattg |
100 |
Q |
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| T |
44875594 |
caatagaaaaggagcaacttctgcgcgagaaataagaattgccagtccctccgcaatagctgttttcccaactccagcttcacccagaagaattggattg |
44875693 |
T |
|
| Q |
101 |
ctttttgtctttcggcatagtatttgaataattctttgaacttcaacttctcggccaataactggatcaatcagtccagcacttgcgcgggcagtgagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44875694 |
ctttttgtctttcggcatagtatttgaataattctttgaacttcaacttctcggccaataactggatcaatcagtccaacacttgcgcgggcagtgagat |
44875793 |
T |
|
| Q |
201 |
ccacgcagaatagtgatagagcactcttcttatctttc |
238 |
Q |
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||||||||||| ||||||||||| |||||||||||||| |
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| T |
44875794 |
ccacgcagaattgtgatagagcattcttcttatctttc |
44875831 |
T |
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