View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_52 (Length: 227)
Name: NF6026_high_52
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 1395593 - 1395398
Alignment:
| Q |
21 |
ctcgtagatttcaagaaaagttgttttgttttatgctatttggattggattcattaagcctttacaaatcattactctcaaaatgcaagttgcaaaatga |
120 |
Q |
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| T |
1395593 |
ctcgtagatttcaagaaaagttgttttgttttatgctatttggattggattcattaagcctttacaaatcattactctcaaaatgcaagttgcaaaatga |
1395494 |
T |
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| Q |
121 |
gagttcagaaatatctagatcaaaaagctatagtttcatttcatttc-----atttgtgttcacttatttttgctagacctacaaatatatctgtg |
211 |
Q |
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| T |
1395493 |
gagttcagaaatatctagatcaaaaagctatagtttcatttcatttcatttcatttgtgttcacttatctttgctagacctacaaatatatctgtg |
1395398 |
T |
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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 10389223 - 10389127
Alignment:
| Q |
65 |
ttggattcattaagcctttacaaatcattactctcaaaatgcaagttgc-aaaatgagagttcagaaatatctagatcaaaaagctatagtttcatt |
160 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||| | ||||| |||||| ||||||| |
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| T |
10389223 |
ttggattcattaagcccttacaaatcattactctcaaactgcaagttgcaaaaatgagaggaaagaaatatctataacaaaaggctatactttcatt |
10389127 |
T |
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