View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6026_high_6 (Length: 584)

Name: NF6026_high_6
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6026_high_6
NF6026_high_6
[»] chr4 (6 HSPs)
chr4 (7-569)||(4482142-4482702)
chr4 (19-102)||(21793820-21793903)
chr4 (294-333)||(35105201-35105240)
chr4 (285-390)||(46545711-46545816)
chr4 (306-399)||(49262646-49262739)
chr4 (343-399)||(46295155-46295211)
[»] chr8 (11 HSPs)
chr8 (7-99)||(41037329-41037421)
chr8 (283-399)||(968360-968476)
chr8 (285-399)||(8484999-8485113)
chr8 (515-556)||(2768557-2768598)
chr8 (489-569)||(20542450-20542530)
chr8 (490-556)||(6270121-6270187)
chr8 (285-399)||(28783060-28783174)
chr8 (488-569)||(3347480-3347561)
chr8 (489-550)||(11151004-11151065)
chr8 (490-550)||(31331083-31331144)
chr8 (520-556)||(41726972-41727008)
[»] chr5 (9 HSPs)
chr5 (7-95)||(2649409-2649497)
chr5 (284-399)||(16773806-16773921)
chr5 (344-399)||(14495767-14495822)
chr5 (285-399)||(30109271-30109384)
chr5 (483-537)||(5471172-5471225)
chr5 (354-399)||(4793042-4793087)
chr5 (489-566)||(22294050-22294126)
chr5 (354-399)||(29075850-29075895)
chr5 (343-399)||(35705044-35705100)
[»] chr2 (10 HSPs)
chr2 (296-387)||(21213780-21213871)
chr2 (285-399)||(37480075-37480189)
chr2 (16-101)||(40207055-40207140)
chr2 (354-388)||(21664123-21664157)
chr2 (306-374)||(42420290-42420358)
chr2 (484-550)||(36087425-36087491)
chr2 (520-569)||(23453408-23453457)
chr2 (349-398)||(37971959-37972008)
chr2 (343-399)||(14780564-14780620)
chr2 (289-333)||(24191842-24191886)
[»] scaffold0258 (1 HSPs)
scaffold0258 (285-399)||(15285-15399)
[»] chr7 (12 HSPs)
chr7 (487-556)||(18756939-18757008)
chr7 (296-399)||(11720922-11721025)
chr7 (285-377)||(22760863-22760955)
chr7 (19-95)||(40835126-40835202)
chr7 (306-399)||(3280448-3280540)
chr7 (489-569)||(19677058-19677138)
chr7 (343-399)||(27313696-27313752)
chr7 (343-399)||(41487417-41487473)
chr7 (284-399)||(22932674-22932788)
chr7 (306-399)||(24438209-24438302)
chr7 (343-399)||(33460384-33460440)
chr7 (285-397)||(38374563-38374675)
[»] chr6 (3 HSPs)
chr6 (285-399)||(33549104-33549218)
chr6 (354-399)||(18263909-18263954)
chr6 (489-569)||(17834946-17835026)
[»] chr3 (9 HSPs)
chr3 (7-95)||(31459830-31459918)
chr3 (296-399)||(16991553-16991656)
chr3 (285-399)||(10499071-10499185)
chr3 (492-556)||(6785767-6785831)
chr3 (343-399)||(54990760-54990816)
chr3 (296-387)||(12761523-12761614)
chr3 (514-556)||(11676731-11676773)
chr3 (341-399)||(40268544-40268602)
chr3 (489-551)||(42437686-42437748)
[»] chr1 (7 HSPs)
chr1 (285-397)||(952511-952623)
chr1 (285-396)||(51814494-51814605)
chr1 (283-396)||(37400272-37400385)
chr1 (487-549)||(37597070-37597134)
chr1 (343-396)||(45266892-45266945)
chr1 (478-550)||(27580-27652)
chr1 (303-399)||(27223092-27223188)
[»] scaffold0957 (1 HSPs)
scaffold0957 (492-556)||(1887-1951)
[»] scaffold0517 (1 HSPs)
scaffold0517 (283-396)||(7691-7804)
[»] scaffold0103 (1 HSPs)
scaffold0103 (514-550)||(28844-28880)
[»] scaffold0006 (1 HSPs)
scaffold0006 (296-388)||(162982-163074)


Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 7 - 569
Target Start/End: Complemental strand, 4482702 - 4482142
Alignment:
Q  7 ggagcagagattattggtacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgtaagcctaa 106  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4482702 ggagcagagattgttggtacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgtaagcctaa 4482603  T
Q  107 ataaaaatgttaattcactaatatatcatcctttttattaaatacaattatcataaaattcacaacaatttaaaaattaaattaattgctattcaatgat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4482602 ataaaaatgttaattcactaatatatcatcctttttattaaatacaattatcataaaattcacaacaatttaaaaattaaattaattgctattcaatgat 4482503  T
Q  207 agatacaggtcaccccatcggttttcggtcggatcggttcgaccgatggacccggtttttaaaacattggtttttatgaacccactggagttggtctgat 306  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  4482502 agataccggtcaccccatcggttttcggtcagatcggttcgaccgatggacccggtttttaaaacattggtttttatgaactcactggagttggtctggt 4482403  T
Q  307 ggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttcttnnnnnnn 406  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    |||           
T  4482402 ggtattggcttatgatctgagagtgtgtttttatttaaggtgtcagattcgattctccccgatgccaatttggatgggctaattta---acttaaaaaaa 4482306  T
Q  407 ntatactacacaaaaaatttacattttcattaaaccaaactagaagtccaaatcttactaatatttcattattatattatgagtcttgctaacgagtgcc 506  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4482305 atatactacacaaaaaatttacattttcattaaaccaaactagaagtccaaatcttactaatatttcattattatattatgagtcttgctaacgagtgcc 4482206  T
Q  507 ctcagaccattgattaaggattctacaaataaaaa-ttttgtcttgtaaatgcaagatattact 569  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  4482205 ctcagaccattgattaaggattctataaataaaaatttttgtcttgtaaatgcaagatattact 4482142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 21793820 - 21793903
Alignment:
Q  19 attggtacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgtaagc 102  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||| | ||||| || || || |||||||||||||||||||||    
T  21793820 attggtacctttgttcttgtctacactgtcttctctgccactgatcctaagaggaacgctagggactcccatgttcctgtaagc 21793903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 333
Target Start/End: Original strand, 35105201 - 35105240
Alignment:
Q  294 gagttggtctgatggtattggcttatgacctgagagtgtg 333  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  35105201 gagttgatctgatggtattggcttaagacctgagagtgtg 35105240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 390
Target Start/End: Original strand, 46545711 - 46545816
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatggg 384  Q
    |||||||| | ||||| ||  ||||||||||||  |||||||||||||| || |  | ||| | |||||||||||| || | |||| ||||||||||||     
T  46545711 aacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcagattcgattttctctgatgtcaatttagatgga 46545810  T
Q  385 ctaatt 390  Q
    ||||||    
T  46545811 ctaatt 46545816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 399
Target Start/End: Complemental strand, 49262739 - 49262646
Alignment:
Q  306 tggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||||| ||||  ||| |||||||||| || |  || |||| |||| |||||||||||||  ||||||||||| |||||||||| || |||||    
T  49262739 tggtattcgcttgggacttgagagtgtgctccttgttgaggtctcaggttcgattctccccagtgccaatttaggtgggctaatttagtttctt 49262646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 46295155 - 46295211
Alignment:
Q  343 aaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||| |||| |||||||||||||| ||||||||| | ||||||| || ||||||||    
T  46295155 aaggtctcaggttcgattctccccggtgccaatttgggtgggctagtttagcttctt 46295211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 41037329 - 41037421
Alignment:
Q  7 ggagcagagattattggtacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgta 99  Q
    ||||| |||||| ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  41037329 ggagctgagattgttggtacctttgttcttgtctacactgttttctctgctactgatgccaagagaaatgctagagactctcatgttcctgta 41037421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 283 - 399
Target Start/End: Original strand, 968360 - 968476
Alignment:
Q  283 tgaacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatg 382  Q
    |||||||||| ||||||| ||| ||||||||||||  |||||| ||||||| || |  |  |||| |||| |||||||||| ||||||||||||||| ||    
T  968360 tgaacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtg 968459  T
Q  383 ggctaattcagcttctt 399  Q
    |||||||| ||||||||    
T  968460 ggctaatttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 285 - 399
Target Start/End: Original strand, 8484999 - 8485113
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatggg 384  Q
    |||||||| | ||||| ||| ||||||| ||||  |||||| ||||||| || | ||| |||| |||  |||||||||| ||| ||||||||||| ||||    
T  8484999 aacccacttgggttggcctggtggtatttgcttgggacctgtgagtgtgctcctctttgaggtctcattttcgattctctccggtgccaatttaggtggg 8485098  T
Q  385 ctaattcagcttctt 399  Q
    |||||| ||||||||    
T  8485099 ctaatttagcttctt 8485113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 515 - 556
Target Start/End: Original strand, 2768557 - 2768598
Alignment:
Q  515 attgattaaggattctacaaataaaaattttgtcttgtaaat 556  Q
    |||| |||||||||||||||||||||||||||||||| ||||    
T  2768557 attggttaaggattctacaaataaaaattttgtcttggaaat 2768598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 20542530 - 20542450
Alignment:
Q  489 gtcttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtcttgtaaatgcaagatattact 569  Q
    ||||||||||  |||||||||||  ||||| ||||||| |||||||||| |||||| |||||| ||||  ||||| |||||    
T  20542530 gtcttgctaaacagtgccctcagggcattggttaaggaatctacaaatagaaatttcgtcttggaaatataagatgttact 20542450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 6270121 - 6270187
Alignment:
Q  490 tcttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtcttgtaaat 556  Q
    |||||||||||||||||||| |  || |  ||||||| ||||||| |||||||||||||||| ||||    
T  6270121 tcttgctaacgagtgccctcggggcaatagttaaggaatctacaattaaaaattttgtcttggaaat 6270187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 399
Target Start/End: Original strand, 28783060 - 28783174
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatggg 384  Q
    |||||||| | |||||  || ||||||||||||  |||||| ||||||| || |  | ||||| |||  ||||||||||| || ||||||||| | ||||    
T  28783060 aacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtggg 28783159  T
Q  385 ctaattcagcttctt 399  Q
    |||||| ||||||||    
T  28783160 ctaatttagcttctt 28783174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 569
Target Start/End: Original strand, 3347480 - 3347561
Alignment:
Q  488 agtcttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtcttgtaaatgcaagatattact 569  Q
    |||||||||||| ||| ||||||   || || ||||| | |||||||||||||||||||||||| ||||  ||||| |||||    
T  3347480 agtcttgctaacaagtaccctcatgacaatggttaagaaatctacaaataaaaattttgtcttgaaaatataagatgttact 3347561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 550
Target Start/End: Complemental strand, 11151065 - 11151004
Alignment:
Q  489 gtcttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtctt 550  Q
    ||||| |||||  ||||||||||  || |||||||||| ||||||||||||| |||||||||    
T  11151065 gtcttcctaaccggtgccctcagggcaatgattaaggaatctacaaataaaatttttgtctt 11151004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 550
Target Start/End: Complemental strand, 31331144 - 31331083
Alignment:
Q  490 tcttgctaacgagtgccc-tcagaccattgattaaggattctacaaataaaaattttgtctt 550  Q
    |||||||||| ||||||| ||| | ||||| |||||||||||||||||| ||||||| ||||    
T  31331144 tcttgctaaccagtgcccctcaaagcattgcttaaggattctacaaatagaaattttatctt 31331083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 556
Target Start/End: Complemental strand, 41727008 - 41726972
Alignment:
Q  520 ttaaggattctacaaataaaaattttgtcttgtaaat 556  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  41727008 ttaaggaatctacaaataaaaattttgtcttggaaat 41726972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 2649497 - 2649409
Alignment:
Q  7 ggagcagagattattggtacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcc 95  Q
    ||||| |||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  2649497 ggagctgagattgttggtacttttgttcttgtctacactgtcttctctgccactgatgccaagagaaatgcaagagactctcacgttcc 2649409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 284 - 399
Target Start/End: Original strand, 16773806 - 16773921
Alignment:
Q  284 gaacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgg 383  Q
    ||||||||| ||||||||||| |||||||| |||  |||||| ||||||| || |  |  |||| |||| |||||||||| | ||||||||||||| |||    
T  16773806 gaacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgg 16773905  T
Q  384 gctaattcagcttctt 399  Q
    ||||||| ||||||||    
T  16773906 gctaatttagcttctt 16773921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 14495822 - 14495767
Alignment:
Q  344 aggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||| || ||||||||    
T  14495822 aggtctcagatttgattctctccgatgccaatttagatgggctagtttagcttctt 14495767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 399
Target Start/End: Complemental strand, 30109384 - 30109271
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatggg 384  Q
    |||||||| | |||||  || |||||||||||| ||||||| ||||||| || |  || |||| |||| |||||||| ||||| ||| ||||||| ||||    
T  30109384 aacccacttgggttggcttggtggtattggcttgtgacctgggagtgtgctcctccttgaggtctcaggttcgattc-ccccggtgctaatttaggtggg 30109286  T
Q  385 ctaattcagcttctt 399  Q
    |||||| ||||||||    
T  30109285 ctaatttagcttctt 30109271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 537
Target Start/End: Original strand, 5471172 - 5471225
Alignment:
Q  483 ttatgagtcttgctaacgagtgccctcagaccattgattaaggattctacaaata 537  Q
    ||||| || ||||||||||||||||||||  ||||| ||||||||||||||||||    
T  5471172 ttatgggttttgctaacgagtgccctcag-gcattggttaaggattctacaaata 5471225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 4793087 - 4793042
Alignment:
Q  354 ttcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    |||||||||||||  ||||||||||| |||||||||| ||||||||    
T  4793087 ttcgattctccccagtgccaatttaggtgggctaatttagcttctt 4793042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 566
Target Start/End: Complemental strand, 22294126 - 22294050
Alignment:
Q  489 gtcttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtcttgtaaatgcaagatatt 566  Q
    ||||||||||  |||||| ||||| || || ||||||| |||||||||| ||||||||||||| ||||  ||||||||    
T  22294126 gtcttgctaaacagtgcc-tcagagcaatggttaaggaatctacaaatagaaattttgtcttggaaatataagatatt 22294050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 29075850 - 29075895
Alignment:
Q  354 ttcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    |||||||||| | | |||||||||||||||||||||| ||||||||    
T  29075850 ttcgattctctctggtgccaatttagatgggctaatttagcttctt 29075895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 35705044 - 35705100
Alignment:
Q  343 aaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||| |||| |||||||||||||| || |||||| | |||||||||| ||||||||    
T  35705044 aaggtctcaggttcgattctccccggtgtcaatttgggtgggctaatttagcttctt 35705100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 21213780 - 21213871
Alignment:
Q  296 gttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgggcta 387  Q
    ||||||||| ||||||||||||  |||||| |||||||||| |  || |||| |||| |||||||||||||| ||||||||||| |||||||    
T  21213780 gttggtctggtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcgattctccccggtgccaatttaggtgggcta 21213871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 285 - 399
Target Start/End: Original strand, 37480075 - 37480189
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatggg 384  Q
    |||||||| | ||||| ||| ||||||||||||  |||||||||||||| || |  | ||||| |||| |||||||||||||| | ||||||| | ||||    
T  37480075 aacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtggg 37480174  T
Q  385 ctaattcagcttctt 399  Q
    |||||| ||||||||    
T  37480175 ctaatttagcttctt 37480189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 40207140 - 40207055
Alignment:
Q  16 attattggtacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgtaag 101  Q
    ||||||||||| |||||| | || |||||||| ||||||||||||||| | ||||||| ||| || || |||||||||||||||||    
T  40207140 attattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagggattcccatgttcctgtaag 40207055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 388
Target Start/End: Complemental strand, 21664157 - 21664123
Alignment:
Q  354 ttcgattctccccgatgccaatttagatgggctaa 388  Q
    |||||||||||||||||||||||||||||||||||    
T  21664157 ttcgattctccccgatgccaatttagatgggctaa 21664123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 42420290 - 42420358
Alignment:
Q  306 tggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaa 374  Q
    ||||||||||||| |||||||||||||| ||||| | ||||| |||  |||||||| | ||||||||||    
T  42420290 tggtattggcttaggacctgagagtgtgctcttactcaaggtctcatgttcgattccctccgatgccaa 42420358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 36087491 - 36087425
Alignment:
Q  484 tatgagtcttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtctt 550  Q
    |||| ||||||||||| |||||||||||  || || ||||||| |||||||||| ||||||| ||||    
T  36087491 tatgggtcttgctaactagtgccctcagggcaatggttaaggaatctacaaatagaaattttatctt 36087425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 23453457 - 23453408
Alignment:
Q  520 ttaaggattctacaaataaaaattttgtcttgtaaatgcaagatattact 569  Q
    ||||||| |||||||||||||||||||||||| ||||  ||||| |||||    
T  23453457 ttaaggaatctacaaataaaaattttgtcttgaaaatataagatgttact 23453408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 37971959 - 37972008
Alignment:
Q  349 tcagattcgattctccccgatgccaatttagatgggctaattcagcttct 398  Q
    |||| |||||||||| ||| ||||||||||| |||||||||| |||||||    
T  37971959 tcaggttcgattctctccggtgccaatttaggtgggctaatttagcttct 37972008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 14780564 - 14780620
Alignment:
Q  343 aaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||| |||| |||||| |||||||||||||||||   |||||||||| ||||||||    
T  14780564 aaggtctcaggttcgatcctccccgatgccaatttgagtgggctaatttagcttctt 14780620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 24191842 - 24191886
Alignment:
Q  289 cactggagttggtctgatggtattggcttatgacctgagagtgtg 333  Q
    |||| ||||||| ||||||||||||||||  ||||||||||||||    
T  24191842 cacttgagttggcctgatggtattggcttgggacctgagagtgtg 24191886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 285 - 399
Target Start/End: Complemental strand, 15399 - 15285
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatggg 384  Q
    |||||||| | ||||||||| ||||||||||||  |||||| ||||||| || |  |  |||| |||| |||||||||| | ||||||||||||| ||||    
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtggg 15300  T
Q  385 ctaattcagcttctt 399  Q
    |||||| ||||||||    
T  15299 ctaatttagcttctt 15285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 487 - 556
Target Start/End: Complemental strand, 18757008 - 18756939
Alignment:
Q  487 gagtcttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtcttgtaaat 556  Q
    ||||||||||||| ||||||||||   ||||||||||||| |||||||||| ||||||||||||| ||||    
T  18757008 gagtcttgctaaccagtgccctcatggcattgattaaggaatctacaaatagaaattttgtcttgcaaat 18756939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 11721025 - 11720922
Alignment:
Q  296 gttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagct 395  Q
    ||||| ||| ||||||||||||  |||||| || |||| || |  ||||||| ||||||||||||||||||  ||||||||| | |||||||||| ||||    
T  11721025 gttggcctggtggtattggcttgggacctgggaatgtgctcctccttaaggtatcagattcgattctccccagtgccaatttgggtgggctaatttagct 11720926  T
Q  396 tctt 399  Q
    ||||    
T  11720925 tctt 11720922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 377
Target Start/End: Original strand, 22760863 - 22760955
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaattt 377  Q
    |||||||| | ||||||||| |||||||| |||  |||||| ||||||| || |  | ||||| |||| ||||||||||||||||||||||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccccgatgccaattt 22760955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 40835202 - 40835126
Alignment:
Q  19 attggtacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcc 95  Q
    ||||| || ||||||||||||||||| || |||||||| || ||| |||| |||||||| |||||||| ||||||||    
T  40835202 attggaacctttgttcttgtttacaccgtgttctctgccacagatcccaaaagaaatgctagagactctcatgttcc 40835126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 399
Target Start/End: Complemental strand, 3280540 - 3280448
Alignment:
Q  306 tggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||||||||||  |||| ||||||||| || |  | ||||| ||| |||||||| |||||| ||||||||||||||| |||||| ||||||||    
T  3280540 tggtattggcttgggacccgagagtgtgctcctcctcaaggtctca-attcgattatccccggtgccaatttagatggactaatttagcttctt 3280448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 19677138 - 19677058
Alignment:
Q  489 gtcttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtcttgtaaatgcaagatattact 569  Q
    ||||||||||| | |||||||||  ||||| ||||||| || ||||||| ||||||||||||| ||||  ||||| |||||    
T  19677138 gtcttgctaaccaatgccctcagggcattggttaaggaatcgacaaatagaaattttgtcttgaaaatataagatgttact 19677058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 27313752 - 27313696
Alignment:
Q  343 aaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||| ||||||||||||||| | ||||||||||||| || ||||||| ||||||||    
T  27313752 aaggtttcagattcgattctctctgatgccaatttaggtgagctaatttagcttctt 27313696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 41487417 - 41487473
Alignment:
Q  343 aaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||||| ||||||||    
T  41487417 aaggtctcaggttcgattcttcccggtgccaatttaggtgggctaatttagcttctt 41487473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 399
Target Start/End: Complemental strand, 22932788 - 22932674
Alignment:
Q  284 gaacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgg 383  Q
    ||||||||| | |||||| || ||||||||||||  |||||| ||||| | ||||||| ||| | |||| || || |||| | | ||||||||||| |||    
T  22932788 gaacccacttgggttggtatggtggtattggcttgggacctgggagtgcgctcttattcaagatctcaggtttgaatctctcgg-tgccaatttaggtgg 22932690  T
Q  384 gctaattcagcttctt 399  Q
    ||||||| ||||||||    
T  22932689 gctaatttagcttctt 22932674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 399
Target Start/End: Complemental strand, 24438302 - 24438209
Alignment:
Q  306 tggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||||||| ||  ||| || ||||||| ||||  ||||||| ||||||||||||||| | | || ||||||  ||||||||||| ||||||||    
T  24438302 tggtattggtttgggacttgggagtgtgctctttcttaaggtttcagattcgattctctctggtgtcaatttgaatgggctaatttagcttctt 24438209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 33460440 - 33460384
Alignment:
Q  343 aaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||| ||||||||||||||||||| || |||||||  ||||||| || ||||||||    
T  33460440 aaggtctcagattcgattctccccggtgtcaatttatgtgggctagtttagcttctt 33460384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 397
Target Start/End: Complemental strand, 38374675 - 38374563
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatggg 384  Q
    |||||||| | |||||  || |||| |||||||  ||||| |||||||| || |  | ||||| | || |||||||||||||| ||||||||||| ||||    
T  38374675 aacccacttgggttggcgtggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggttcgattctccccggtgccaatttaggtggg 38374576  T
Q  385 ctaattcagcttc 397  Q
    ||| || ||||||    
T  38374575 ctagtttagcttc 38374563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 285 - 399
Target Start/End: Original strand, 33549104 - 33549218
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatggg 384  Q
    |||||||| | ||||||||| ||||||||||||  |||||| ||||||| || |  |  |||| |||| |||||||||| | ||||||||||||| || |    
T  33549104 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgag 33549203  T
Q  385 ctaattcagcttctt 399  Q
    |||||| ||||||||    
T  33549204 ctaatttagcttctt 33549218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 18263909 - 18263954
Alignment:
Q  354 ttcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    |||||||||||||  ||||||||||| |||||||||| ||||||||    
T  18263909 ttcgattctccccagtgccaatttaggtgggctaatttagcttctt 18263954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 17834946 - 17835026
Alignment:
Q  489 gtcttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtcttgtaaatgcaagatattact 569  Q
    ||||||||||| ||| ||||| |  ||||| ||||||||||||||||||  ||| |||||||  ||||  |||||||||||    
T  17834946 gtcttgctaaccagtaccctcggggcattggttaaggattctacaaatagcaatattgtctttgaaatataagatattact 17835026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 31459918 - 31459830
Alignment:
Q  7 ggagcagagattattggtacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcc 95  Q
    ||||| |||||| ||||||| ||||||||||| ||||| |||||||| || |||||||||||| | |  || ||||||||||| |||||    
T  31459918 ggagctgagattgttggtacctttgttcttgtctacaccgtcttctccgccactgatgccaagcgtagcgccagagactcccacgttcc 31459830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 399
Target Start/End: Original strand, 16991553 - 16991656
Alignment:
Q  296 gttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagct 395  Q
    ||||| ||| ||||||||||||  || ||| ||||||  |||| ||| |||| |||| || ||||||| ||||||||||||||  |||||||||| ||||    
T  16991553 gttggcctggtggtattggcttgggatctgggagtgtactcttctttgaggtctcagttttgattctctccgatgccaatttatgtgggctaatttagct 16991652  T
Q  396 tctt 399  Q
    ||||    
T  16991653 tctt 16991656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 399
Target Start/End: Complemental strand, 10499185 - 10499071
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatggg 384  Q
    |||||||| | ||||| ||| ||||||||||||  || ||| |||| || ||||  || |||| |||| |||||||||| |||||| |||||| | ||||    
T  10499185 aacccacttgggttggcctggtggtattggcttgggatctgggagtctgctcttccttgaggtctcaggttcgattctctccgatgtcaatttgggtggg 10499086  T
Q  385 ctaattcagcttctt 399  Q
    |||||| ||||||||    
T  10499085 ctaatttagcttctt 10499071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 556
Target Start/End: Original strand, 6785767 - 6785831
Alignment:
Q  492 ttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtcttgtaaat 556  Q
    |||||||| |||||||||||  || || |||||||||||||||||| || |||||||||| ||||    
T  6785767 ttgctaaccagtgccctcagggcaatggttaaggattctacaaatagaatttttgtcttgaaaat 6785831  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 54990760 - 54990816
Alignment:
Q  343 aaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||| |||| ||||||||||| ||||| |||||||| |||||||||| ||||||||    
T  54990760 aaggtctcaggttcgattctcctcgatggcaatttaggtgggctaatttagcttctt 54990816  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 12761523 - 12761614
Alignment:
Q  296 gttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgggcta 387  Q
    ||||||||| |||||||| |||  |||||| |||||||||| |  || || | |||| ||||||| |||||| ||||||||||| |||||||    
T  12761523 gttggtctggtggtattgacttgggacctgggagtgtgttcctccttgagctctcaggttcgattttccccggtgccaatttaggtgggcta 12761614  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 556
Target Start/End: Original strand, 11676731 - 11676773
Alignment:
Q  514 cattgattaaggattctacaaataaaaattttgtcttgtaaat 556  Q
    ||||||||||||| |||||||||| ||||||||||||| ||||    
T  11676731 cattgattaaggaatctacaaatataaattttgtcttgaaaat 11676773  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 40268544 - 40268602
Alignment:
Q  341 ttaaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||||| |||| |||||||||||||||||||||||| | |||| || || ||||||||    
T  40268544 ttaaggtctcaggttcgattctccccgatgccaatttcggtgggttagtttagcttctt 40268602  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 551
Target Start/End: Original strand, 42437686 - 42437748
Alignment:
Q  489 gtcttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtcttg 551  Q
    |||||| |||| |||||||||||  || || |||||||||||||||||| ||||||| |||||    
T  42437686 gtcttgataaccagtgccctcagggcaatggttaaggattctacaaatagaaattttatcttg 42437748  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 397
Target Start/End: Original strand, 952511 - 952623
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatggg 384  Q
    |||||||| ||||||||||| |||| |||||||  |||||| ||||||| || |  | || || |||| || |||||||||||||| |||||||| ||||    
T  952511 aacccacttgagttggtctggtggtgttggcttgggacctgggagtgtgctcatcctcaaagtctcaggttagattctccccgatgtcaatttaggtggg 952610  T
Q  385 ctaattcagcttc 397  Q
     ||||| ||||||    
T  952611 ttaatttagcttc 952623  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 396
Target Start/End: Original strand, 51814494 - 51814605
Alignment:
Q  285 aacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatggg 384  Q
    |||||||| | ||||| |||||||||||| |||  || ||||||||||| || |  | ||||| |||| |||||||||| ||| ||||||||| | ||||    
T  51814494 aacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtggg 51814593  T
Q  385 ctaattcagctt 396  Q
    |||||| |||||    
T  51814594 ctaatttagctt 51814605  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 396
Target Start/End: Original strand, 37400272 - 37400385
Alignment:
Q  283 tgaacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatg 382  Q
    |||||| ||| | ||||||||| ||||||||||||  ||||||| |||||| || |  ||||||| |||  |||||||||  ||| ||||||||| ||||    
T  37400272 tgaaccaacttgggttggtctggtggtattggcttgagacctgaaagtgtgctcctccttaaggtctcaagttcgattctatccggtgccaatttggatg 37400371  T
Q  383 ggctaattcagctt 396  Q
    | ||| || |||||    
T  37400372 gactagtttagctt 37400385  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 549
Target Start/End: Original strand, 37597070 - 37597134
Alignment:
Q  487 gagtcttgctaacgagtgc--cctcagaccattgattaaggattctacaaataaaaattttgtct 549  Q
    ||||||||||||  |||||  |||| || |||||||||| |||||||||||||||||| ||||||    
T  37597070 gagtcttgctaaatagtgcgtcctcggatcattgattaaagattctacaaataaaaatattgtct 37597134  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 45266892 - 45266945
Alignment:
Q  343 aaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagctt 396  Q
    ||||| |||| |||||||||||||| ||||||||| ||||||||| || |||||    
T  45266892 aaggtctcaggttcgattctccccggtgccaatttggatgggctagtttagctt 45266945  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 27652 - 27580
Alignment:
Q  478 ttatattatgagtcttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtctt 550  Q
    |||||||||| ||||||||||| ||||||||||   || |||||||||   ||| ||||||||| ||||||||    
T  27652 ttatattatgggtcttgctaaccagtgccctcacgacaatgattaagggaactataaataaaaaatttgtctt 27580  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 399
Target Start/End: Complemental strand, 27223188 - 27223092
Alignment:
Q  303 tgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgggctaattcagcttctt 399  Q
    ||||||||||| |||| || ||| ||||||| |||| || ||||| |||| ||||||||||||| || | ||||||  |||| ||||| || |||||    
T  27223188 tgatggtattgacttaggatctgggagtgtgctcttcttcaaggtctcaggttcgattctccccaatactaatttaagtgggttaatttagtttctt 27223092  T

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Target: scaffold0957 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 556
Target Start/End: Original strand, 1887 - 1951
Alignment:
Q  492 ttgctaacgagtgccctcagaccattgattaaggattctacaaataaaaattttgtcttgtaaat 556  Q
    |||||||| |||||||||| ||||  | |||| || |||||||||| ||||||||||||||||||    
T  1887 ttgctaaccagtgccctcaaaccaagggttaatgaatctacaaatagaaattttgtcttgtaaat 1951  T

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Target: scaffold0517 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 396
Target Start/End: Complemental strand, 7804 - 7691
Alignment:
Q  283 tgaacccactggagttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatg 382  Q
    |||||| ||| | ||||||||| ||||||||||||  ||||||| |||||| || |  ||||||| |||  |||||||||  ||| ||||||||| ||||    
T  7804 tgaaccaacttgggttggtctggtggtattggcttgagacctgaaagtgtgctcctccttaaggtctcaagttcgattctatccggtgccaatttggatg 7705  T
Q  383 ggctaattcagctt 396  Q
    | ||| || |||||    
T  7704 gactagtttagctt 7691  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Original strand, 28844 - 28880
Alignment:
Q  514 cattgattaaggattctacaaataaaaattttgtctt 550  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  28844 cattgattaaggaatctacaaatagaaattttgtctt 28880  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 163074 - 162982
Alignment:
Q  296 gttggtctgatggtattggcttatgacctgagagtgtgttcttatttaaggtgtcagattcgattctccccgatgccaatttagatgggctaa 388  Q
    ||||||||  |||| ||| ||||||||||||||||||| || |   |||||| | || |||||||||| ||| || |||||||||||| ||||    
T  163074 gttggtctagtggttttgacttatgacctgagagtgtgctcctccataaggtctgaggttcgattctctccggtgtcaatttagatggactaa 162982  T

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