View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_8 (Length: 559)
Name: NF6026_high_8
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 540
Target Start/End: Complemental strand, 34628586 - 34628039
Alignment:
| Q |
10 |
attattctagcgtaaagttgtcggtttgagtcctgctgcctctaatttgtaatatattctattnnnnnnnnn---catgtggagacttgaaacgatttaa |
106 |
Q |
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| T |
34628586 |
attattttagcgtaaagttgttgatttgagtcctgctgcctctaatttgtaatatattctattaaaaaaaaaaaacatgtggagactt-aaacgatttaa |
34628488 |
T |
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| Q |
107 |
tacatttttgacaccctcaacaaaataactcaagattcgccgctgatcatactaaccccaagtgggttaactcaatccacacatatgacataaaaaagta |
206 |
Q |
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| T |
34628487 |
tatatttttggcatccccaacaaaataactcaagatccgccgctgatcatactaaccccaagtgggttaactcaatccacacatatgacataaaaaagta |
34628388 |
T |
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| Q |
207 |
aatattactctaaccgctaatatttgtcatttnnnnnnnctccacaaatatgagcgaaatttaagcggaggaccatggtctatgtcgatctttcttctat |
306 |
Q |
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| T |
34628387 |
aatattactctaaccgctaatatttgtcatttaaaaaaactccacaaatatgagcgaaatttaagcggaggaccatggtctatgtcgatctttcttctat |
34628288 |
T |
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| Q |
307 |
ctccgtctatgtaatacacatgtgcgct----------tcaccgcgccatgctcatgcatacgtaggtatgcatttgcctccgctatcctttccacatgc |
396 |
Q |
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|||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34628287 |
ctccgtctatgtaatacatatgtgtgcttttgtgcacatcaccgcgccatgctcatgcatacgtaggtatgcatttgcctccgctatcctttccacatgc |
34628188 |
T |
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| Q |
397 |
atcaacgacacatgaatccattttgatgatttgatcgattaaattttatcaaggactgaattattgggaaaaacgttgcaatttatcatctggtttatct |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34628187 |
atcaacgacacatgaatccattttgatgatttgatcgattaaattttatcaaggactgaattattgggaaaaacgttgcaatttatcatctggtttatct |
34628088 |
T |
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| Q |
497 |
gag-----taatagaaattagtagtagtaatccactaattggttacctc |
540 |
Q |
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| T |
34628087 |
gagcacaataatagaaattagtagtagtaatccactaattggttacctc |
34628039 |
T |
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