View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6026_high_9 (Length: 553)

Name: NF6026_high_9
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6026_high_9
NF6026_high_9
[»] chr3 (3 HSPs)
chr3 (16-268)||(35732815-35733068)
chr3 (259-315)||(43591547-43591603)
chr3 (270-315)||(3267724-3267769)
[»] chr5 (1 HSPs)
chr5 (273-315)||(8224403-8224445)
[»] chr8 (3 HSPs)
chr8 (273-315)||(38819680-38819722)
chr8 (272-333)||(15888761-15888822)
chr8 (445-493)||(8840375-8840423)
[»] chr7 (5 HSPs)
chr7 (269-315)||(4093312-4093358)
chr7 (270-313)||(20056552-20056595)
chr7 (270-315)||(3256789-3256834)
chr7 (270-322)||(12424459-12424511)
chr7 (268-304)||(27661352-27661388)
[»] chr4 (4 HSPs)
chr4 (273-323)||(16834659-16834709)
chr4 (273-315)||(41764198-41764240)
chr4 (273-321)||(16301406-16301454)
chr4 (272-312)||(35478231-35478271)
[»] chr2 (2 HSPs)
chr2 (269-333)||(9372905-9372968)
chr2 (273-323)||(5709853-5709903)
[»] chr1 (2 HSPs)
chr1 (272-315)||(41405263-41405306)
chr1 (273-311)||(51679859-51679897)
[»] chr6 (2 HSPs)
chr6 (269-314)||(13040988-13041033)
chr6 (269-314)||(13058491-13058536)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 35732815 - 35733068
Alignment:
Q  16 atatataacaaggtggaatgggagggaggggctagaggccatgcttgctggccaccctctccatccatccctgagcatggggatgcatggcaagataacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  35732815 atatataacaaggtggaatgggagggaggggctagaggccatgcttgctggccacactctccatccatccctgagcat-gggatgcatggcaagataacc 35732913  T
Q  116 gaaggatactctatagtttggtctaagacgannnnnnnnnnnnggtccattgctggataaacgttggttacactcaatctcaagctgttttaattaatgc 215  Q
    |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35732914 gaaggatactctatagtttggtctaagacgattttttttttttggtccattgctggataaacgttggttacactcaatctcaagctgttttaattaatgc 35733013  T
Q  216 taaaactatgtgaacaatcaattgaac--ctattcatgtgttaccttattatatt 268  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  35733014 taaaactatgtgaacaatcaattgaacatctattcatgtgttaccttattatatt 35733068  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 43591603 - 43591547
Alignment:
Q  259 ttattatattcagaaatgataaatggacacaaaaatccaaacacaatacagacacca 315  Q
    ||||||| || || |||||||||||||||||||||| ||||||||||||||||||||    
T  43591603 ttattattttgagcaatgataaatggacacaaaaatgcaaacacaatacagacacca 43591547  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 3267769 - 3267724
Alignment:
Q  270 agaaatgataaatggacacaaaaatccaaacacaatacagacacca 315  Q
    ||||||||||| || |||||||||||||||||||||||||||||||    
T  3267769 agaaatgataagtgaacacaaaaatccaaacacaatacagacacca 3267724  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 8224403 - 8224445
Alignment:
Q  273 aatgataaatggacacaaaaatccaaacacaatacagacacca 315  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  8224403 aatgataaatggacacaaaaatgcaaacacaatacagacacca 8224445  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 38819722 - 38819680
Alignment:
Q  273 aatgataaatggacacaaaaatccaaacacaatacagacacca 315  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  38819722 aatgataaatggacacaaaaatgcaaacacaatacggacacca 38819680  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 15888761 - 15888822
Alignment:
Q  272 aaatgataaatggacacaaaaatccaaacacaatacagacaccacagtataattatacggta 333  Q
    |||||||||||| ||||||   |  ||||||||||||||||||||  |||||||||||||||    
T  15888761 aaatgataaatgaacacaattttttaaacacaatacagacaccactatataattatacggta 15888822  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 493
Target Start/End: Complemental strand, 8840423 - 8840375
Alignment:
Q  445 caccaccaccgtctctgcaacgcagtggccacccattatcctcttccct 493  Q
    ||||||||||||||||||||| | |||||||| | || |||||||||||    
T  8840423 caccaccaccgtctctgcaactcggtggccactccttctcctcttccct 8840375  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 4093358 - 4093312
Alignment:
Q  269 cagaaatgataaatggacacaaaaatccaaacacaatacagacacca 315  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||||    
T  4093358 cagaaatgataaatgaacacaaaaaactaaacacaatacagacacca 4093312  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 20056595 - 20056552
Alignment:
Q  270 agaaatgataaatggacacaaaaatccaaacacaatacagacac 313  Q
    |||||||||||||| | |||||||| ||||||||||||||||||    
T  20056595 agaaatgataaatgaatacaaaaatgcaaacacaatacagacac 20056552  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 3256789 - 3256834
Alignment:
Q  270 agaaatgataaatggacacaaaaatccaaacacaatacagacacca 315  Q
    ||||||||||| |  |||||||||||||||||||||| ||||||||    
T  3256789 agaaatgataactaaacacaaaaatccaaacacaatatagacacca 3256834  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 12424459 - 12424511
Alignment:
Q  270 agaaatgataaatggacacaaaaatccaaacacaatacagacaccacagtata 322  Q
    |||||||||||||| ||||||||   ||||||||| | |||||||||||||||    
T  12424459 agaaatgataaatgaacacaaaatatcaaacacaaaatagacaccacagtata 12424511  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 27661388 - 27661352
Alignment:
Q  268 tcagaaatgataaatggacacaaaaatccaaacacaa 304  Q
    |||| |||||||||||||||||||||| |||||||||    
T  27661388 tcaggaatgataaatggacacaaaaatacaaacacaa 27661352  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 16834709 - 16834659
Alignment:
Q  273 aatgataaatggacacaaaaatccaaacacaatacagacaccacagtataa 323  Q
    ||||||||||| |||||||| |  |||||||||||||||||||||||||||    
T  16834709 aatgataaatgaacacaaaattataaacacaatacagacaccacagtataa 16834659  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 41764240 - 41764198
Alignment:
Q  273 aatgataaatggacacaaaaatccaaacacaatacagacacca 315  Q
    |||||||||||||||||||  | ||||||||||||||||||||    
T  41764240 aatgataaatggacacaaattttcaaacacaatacagacacca 41764198  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 16301406 - 16301454
Alignment:
Q  273 aatgataaatggacacaaaaatccaaacacaatacagacaccacagtat 321  Q
    |||||||| || ||||||||| || ||||||||||||||||||| ||||    
T  16301406 aatgataactgaacacaaaaaacccaacacaatacagacaccaccgtat 16301454  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 35478271 - 35478231
Alignment:
Q  272 aaatgataaatggacacaaaaatccaaacacaatacagaca 312  Q
    |||||||||||| |||||||||  |||||||||||||||||    
T  35478271 aaatgataaatgaacacaaaaaatcaaacacaatacagaca 35478231  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 9372968 - 9372905
Alignment:
Q  269 cagaaatgataaatggacacaaaaatccaaacacaatacagacaccacagtataattatacggta 333  Q
    ||||||||||||||||||||| |  |  | |||||||||||||||||| ||||||||||||||||    
T  9372968 cagaaatgataaatggacacatatttt-agacacaatacagacaccaccgtataattatacggta 9372905  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 5709903 - 5709853
Alignment:
Q  273 aatgataaatggacacaaaaatccaaacacaatacagacaccacagtataa 323  Q
    ||||||||||| |||||||| |  | |||||||||||||||||||||||||    
T  5709903 aatgataaatgaacacaaaattttagacacaatacagacaccacagtataa 5709853  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 41405263 - 41405306
Alignment:
Q  272 aaatgataaatggacacaaaaatccaaacacaatacagacacca 315  Q
    |||||||| | | |||||||||||||||||||||||||||||||    
T  41405263 aaatgatagaagtacacaaaaatccaaacacaatacagacacca 41405306  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 51679859 - 51679897
Alignment:
Q  273 aatgataaatggacacaaaaatccaaacacaatacagac 311  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  51679859 aatgataaatgaacacaaaaaaccaaacacaatacagac 51679897  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 13040988 - 13041033
Alignment:
Q  269 cagaaatgataaatggacacaaaaatccaaacacaatacagacacc 314  Q
    ||||||||||||||| ||||| ||| |||||||||||| |||||||    
T  13040988 cagaaatgataaatgaacacacaaaaccaaacacaatagagacacc 13041033  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 13058491 - 13058536
Alignment:
Q  269 cagaaatgataaatggacacaaaaatccaaacacaatacagacacc 314  Q
    ||||||||||||||| ||||| |||  |||||||||||||||||||    
T  13058491 cagaaatgataaatgaacacacaaaatcaaacacaatacagacacc 13058536  T

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