View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6026_low_10 (Length: 466)

Name: NF6026_low_10
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6026_low_10
NF6026_low_10
[»] chr3 (12 HSPs)
chr3 (18-452)||(33607875-33608313)
chr3 (24-134)||(33615981-33616091)
chr3 (251-349)||(33626275-33626373)
chr3 (252-356)||(33615773-33615877)
chr3 (24-131)||(33587423-33587530)
chr3 (24-131)||(33594595-33594702)
chr3 (24-131)||(33601726-33601833)
chr3 (24-134)||(33626478-33626588)
chr3 (252-332)||(33594103-33594183)
chr3 (252-332)||(33601234-33601314)
chr3 (252-318)||(33586945-33587011)
chr3 (24-141)||(33621350-33621467)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 33608313 - 33607875
Alignment:
Q  18 aatgtgtgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttg 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33608313 aatgtttgactatcatacacacaatacatattcacttcagcaccagctgccttccttagaatatctggaaagaatttttgaagaaacggcaccatcgttg 33608214  T
Q  118 tgacacctcctgaaa-ttcgacattttcacaacaaaatcatgagaataaatttcgacaataattttgattgctaatgtaatttaattatgtctaataaat 216  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33608213 tgacacctcctgaaaattcgacattttcacaacaaaatcatgagaataaatttcgacaataattttgattgctaatgtaattcaattatgtctaataaat 33608114  T
Q  217 ataataaggtgacacaattcatttgtaacaaagtgaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatg 316  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33608113 ataataaggtgtcacaattcatttgtaacaaagtgaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatg 33608014  T
Q  317 atgattgaaagtgttaacttgccaccaatattgatagcagcatctggtgtactatccacagcaaataccacaccagccatttttgaaataccttttttgt 416  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  33608013 atgattgaaagtgttaacttgccaacaatattgacagcagcatctggtgtactatccacagcaaataccccaccagccatttttgaaatacctttttttt 33607914  T
Q  417 tttgtctatggatttcag---ttagtttaagtctgtgct 452  Q
    ||  ||||||||||||||   ||||||||||||||||||    
T  33607913 ttcttctatggatttcagtaattagtttaagtctgtgct 33607875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 33616091 - 33615981
Alignment:
Q  24 tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac 123  Q
    |||||||||||||||||||||||||||||||| ||||  || ||||| || ||||| |||||| |||||||||| ||||| |||||||||||||| ||||    
T  33616091 tgactatcatacacacaatacatattcacttcggcactggctgcctttctcagaatgtctggaaagaatttttggagaaatggcaccatcgttgtaacac 33615992  T
Q  124 ctcctgaaatt 134  Q
    |||||||||||    
T  33615991 ctcctgaaatt 33615981  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 251 - 349
Target Start/End: Complemental strand, 33626373 - 33626275
Alignment:
Q  251 gaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgttaacttgccaccaatattg 349  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| | | |||||| |||| ||||| ||||    
T  33626373 gaacctgaaattccgatgtcatatccaaaaagaaggccactggaagcagcaactatgcaggtaatgatgattaagaatgttaatttgctaccaacattg 33626275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 33615877 - 33615773
Alignment:
Q  252 aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgttaacttgccaccaatattgat 351  Q
    ||||||||| ||| |  ||||||||| ||||||| |||| ||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  33615877 aacctgaaactccgagatcatatccataaagaaggccaccggatgcagcaactatgcaggtaatgatgattgagagtgttaacttgccaccaatattgat 33615778  T
Q  352 agcag 356  Q
     ||||    
T  33615777 ggcag 33615773  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 33587530 - 33587423
Alignment:
Q  24 tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac 123  Q
    ||||| ||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||  ||||||| |  ||||| |||||||| ||||| ||||    
T  33587530 tgactgtcatacacacagtacatatttacttcagtaccagctgcctttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacac 33587431  T
Q  124 ctcctgaa 131  Q
    ||||||||    
T  33587430 ctcctgaa 33587423  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 33594702 - 33594595
Alignment:
Q  24 tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac 123  Q
    ||||| ||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||  ||||||| |  ||||| |||||||| ||||| ||||    
T  33594702 tgactgtcatacacacagtacatatttacttcagtaccagctgcctttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacac 33594603  T
Q  124 ctcctgaa 131  Q
    ||||||||    
T  33594602 ctcctgaa 33594595  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 33601833 - 33601726
Alignment:
Q  24 tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac 123  Q
    ||||| ||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||  ||||||| |  ||||| |||||||| ||||| ||||    
T  33601833 tgactgtcatacacacagtacatatttacttcagtaccagctgcctttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacac 33601734  T
Q  124 ctcctgaa 131  Q
    ||||||||    
T  33601733 ctcctgaa 33601726  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 33626588 - 33626478
Alignment:
Q  24 tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac 123  Q
    ||||||||||||||||| ||||| ||||| | || |||| | ||||| |||||||| |||||  ||||||||| |||||| |||  ||| ||||||||||    
T  33626588 tgactatcatacacacagtacatgttcaccttagtaccaactgcctttcttagaatgtctgggaagaattttttaagaaatggcttcatagttgtgacac 33626489  T
Q  124 ctcctgaaatt 134  Q
    |||||||||||    
T  33626488 ctcctgaaatt 33626478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 33594183 - 33594103
Alignment:
Q  252 aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgtta 332  Q
    |||||||||| |||||||||||||||||||  || ||||| || ||||||||||| || |||||||| | ||| |||||||    
T  33594183 aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgtta 33594103  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 33601314 - 33601234
Alignment:
Q  252 aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgtta 332  Q
    |||||||||| |||||||||||||||||||  || ||||| || ||||||||||| || |||||||| | ||| |||||||    
T  33601314 aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgtta 33601234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 33587011 - 33586945
Alignment:
Q  252 aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgat 318  Q
    |||||||||| |||||||||||||||||||  || ||||| || ||||||||||| || ||||||||    
T  33587011 aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgat 33586945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 33621467 - 33621350
Alignment:
Q  24 tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac 123  Q
    ||||||||||||||||||||||| ||||| | || |||||| || || || ||||| | |||  | ||||||| |||||| |||  ||| || |||||||    
T  33621467 tgactatcatacacacaatacatgttcaccttagtaccagctgcatttctaagaatgtatgggaataattttttaagaaatggcttcatggtggtgacac 33621368  T
Q  124 ctcctgaaattcgacatt 141  Q
    || |||||||| ||||||    
T  33621367 cttctgaaatttgacatt 33621350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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