View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_11 (Length: 466)
Name: NF6026_low_11
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Complemental strand, 20851640 - 20851204
Alignment:
| Q |
16 |
gatgctcacattggtgataaccttagtgaggagctcttccttagagtggagcgccgagccactaatcgtgccaaagagcttctagagaaactacagttct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20851640 |
gatgctcacattggtgataaccttagtgaggagctcttccttagagtggagcgccgagccactaatcgtgccaaagagcttctagagaaactacagtgct |
20851541 |
T |
|
| Q |
116 |
ttcacatagtcgcatccctttcttttagtcaatgagaacaagtctcgatccatcgttcattgatttctaataccatatgcctatttataatatataaaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20851540 |
ttcacatagtcgcatccctttcttttagtcaatgagaacaagtctcgatccatcgttcattgatttctaataccatatgcctatttataatatataaaca |
20851441 |
T |
|
| Q |
216 |
atcgttagaaattggaccattttatacatttcatagaaaaaagacacttgaagaagacaatgcaaagacttttctcttgcctctcactctatcatgtttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20851440 |
atcgttagaaattggaccattttatacatttcatagaaaaaagacacttgaagacgacaatgcaaagacttttctcttgcctctcactctatcatgtttt |
20851341 |
T |
|
| Q |
316 |
gaaagagaaaagagaggttcgctgcagctgtggaggatcaatatcatttgtttttccctcttttgtgtattatatatatatggctgattgtaattatttt |
415 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20851340 |
gaaagagaaaagagaggttcgctgcagcggtggaggatcaatatcatttgtttttccctcttttgtgtattatatatatatggctgattgtaattatttt |
20851241 |
T |
|
| Q |
416 |
ctacacataatgtccgttttgacttgtgttgtgttcc |
452 |
Q |
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| T |
20851240 |
ctacacataatgtccgttttgacttgtgtggtgttcc |
20851204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 40999278 - 40998952
Alignment:
| Q |
16 |
gatgctcacattggtgataaccttagtgaggagctcttccttagagtggagcgccgagccactaatcgtgccaaagagcttctagagaaactacagttct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40999278 |
gatgctcacattggtgataaccttagtgaggagctcttccttagagtggagcgccgagccactaatcgtgccaaagagcttctagagaaactacagttct |
40999179 |
T |
|
| Q |
116 |
ttcacatagtcgcatccctttcttttagtcaatgagaacaagtctcgatccatcgttcattgatttctaataccatatgcctatttataatatataaaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40999178 |
ttcacatagtcgcatccctttcttttagtcaatgagaacaagtctcgatccatcgttcattgatttctaataccatatgcctatttataatatataaaca |
40999079 |
T |
|
| Q |
216 |
atcgttagaaattggaccattttatacatttcatagaaaaaagacacttgaagaagacaatgcaaagacttttctcttgcctctcactctatcatg---- |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40999078 |
atcgttagaaattggaccattttatacatttcatagaaaaaagacacttgaagacgacaatgcaaagacttttctcttgcctctcactctatcatgttta |
40998979 |
T |
|
| Q |
312 |
-ttttgaaagagaaaagagaggttcgc |
337 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
40998978 |
attttgaaagagaaaagagaggttcgc |
40998952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 335 - 452
Target Start/End: Complemental strand, 40998913 - 40998794
Alignment:
| Q |
335 |
cgctgcagctgtggaggatcaatatcatttgtttttccctcttttgtgtattatatatatat--ggctgattgtaattattttctacacataatgtccgt |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40998913 |
cgctgcagctgtggaggatcaatatcatttgtttttccctcttttgtgtattatatatatatatggctgattgtaattattttctacacataatgtccgt |
40998814 |
T |
|
| Q |
433 |
tttgacttgtgttgtgttcc |
452 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
40998813 |
tttgacttgttttgtgttcc |
40998794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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