View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_12 (Length: 463)
Name: NF6026_low_12
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 1789429 - 1789587
Alignment:
| Q |
18 |
tgaaagatagaatataagaatactatatgaaccataataatgacttaaagctatagagaataaaagtaaaagctagtaaaagataatttttgatgaattc |
117 |
Q |
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| T |
1789429 |
tgaaagatagaatataagaatactatatgaaccataataatgagttaaagctatagaaaataaaagta----------aaagatagtttttgatgaattc |
1789518 |
T |
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| Q |
118 |
aatgaaactagtttcttgtatttgtcacctttagaatttttgcataagaaagataaccattccttttta |
186 |
Q |
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| T |
1789519 |
aatgaaactagtttcttgtatttgtcacctttagaatttttgcataagaaagataaccattccttttta |
1789587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 269 - 383
Target Start/End: Original strand, 1789670 - 1789784
Alignment:
| Q |
269 |
gtacatgaaaatgatttttgttaacatagaagggaatgctttatgaaaatattttacaatttcaaagataagtagtgagaataacatattattctaattg |
368 |
Q |
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| T |
1789670 |
gtacatgaaaatgatttttgttaacatagaaggtaatgctttatgaaaatattttacaatttcaaagataagtagtgagaataacatattattctaattg |
1789769 |
T |
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| Q |
369 |
gaccataaatgtaag |
383 |
Q |
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| T |
1789770 |
gaccataaatgtaag |
1789784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 457
Target Start/End: Original strand, 1790508 - 1790586
Alignment:
| Q |
384 |
ttgcattggtcggcaacaagactaactattcacaagaatcaaaagggtggtatt-----agttgatttgttcatctcac |
457 |
Q |
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| T |
1790508 |
ttgcattggtcggcaacaagactaactattcacaagaatcattagggtggtattatattagttgatttgttcatgtcac |
1790586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 430
Target Start/End: Original strand, 1784653 - 1784704
Alignment:
| Q |
379 |
gtaagttgcattggtcggcaacaagactaactattcacaagaatcaaaaggg |
430 |
Q |
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| T |
1784653 |
gtaacttgcattggccggcaacaagactaattgtacacaagaatcaaaaggg |
1784704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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