View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_19 (Length: 398)
Name: NF6026_low_19
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 29983583 - 29983955
Alignment:
| Q |
9 |
gaagaatatgagaaaaaggatgaacaataatagagtgaatagggaaaaaggattatgatgaatggattgtatgagggaattttgggttttaaataggcat |
108 |
Q |
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| T |
29983583 |
gaagaataggagaaaaaggatgaacaataatagagtgaatagggaaaaaggcttaagatgaatggattgtatgagggaaatttgggttttatataggcat |
29983682 |
T |
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| Q |
109 |
tagtgaagtgccacgtcacttcaagaagggtacattacatccaccatggcccaaagagtcatgtgcacatgaacacataaaaataataatcatatggata |
208 |
Q |
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| T |
29983683 |
taatgaagtgccacgtcacttcaagaagggtacgttacatccaccatggcccaaagagtcatgtgcacatgaacacataaaaataataattatatggata |
29983782 |
T |
|
| Q |
209 |
tgggtgatcatgttgcatattaaatagcaatatggcataaataacaaattaaagttgtaccataaattagattaagaaatatgaagacctaaataatgta |
308 |
Q |
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| T |
29983783 |
tgggtgatcatgttgcatattaaatagcaatatggcataaataacaaattaaagttgtaccataaattagattaagaaatatgaagacctaaataatgta |
29983882 |
T |
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| Q |
309 |
cgtgtgctctggcaatagggacagctcgaagtaagcaagatattgtggaaatcatagaatctgaccccaaaac |
381 |
Q |
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| T |
29983883 |
cgtgtgctctggcaacagggacagctcgaagtaagcaagatattgtggaaatcatagaatctgaccccaaaac |
29983955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 52 - 381
Target Start/End: Original strand, 29979328 - 29979657
Alignment:
| Q |
52 |
gaaaaaggattatgatgaatggattgtatgag----ggaattttgggttttaaataggcattagtgaagtgccacgtcacttcaagaagggtacattaca |
147 |
Q |
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| T |
29979328 |
gaaaaaggcttaagatgaattgattgtatgagcaagggaagttaggattttatataggcccttatgaggtgccatgtcacttcaagaaggggacaataca |
29979427 |
T |
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| Q |
148 |
tccaccatggcccaaagagtcatgtgcacatgaacacataaaaataataatcatatggatatgggtgatcatgttgcatattaaa-tagcaatatggcat |
246 |
Q |
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| T |
29979428 |
cccatcatggcctaaacagtcatgtgcacatgaacacacaaaaacaataagtatat-gatatgggtgatcatgttgcatatcaaattagcaatatggcat |
29979526 |
T |
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| Q |
247 |
aaataacaaattaaagttgtaccataaattagattaagaaatatgaagacctaaataatgtacgtgtgctctggcaatagggacagctcgaagtaagcaa |
346 |
Q |
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| T |
29979527 |
aaataatttattaaagctgtacaataagttagataaagaaatatggtggc----ataatgtacgtgtgctctggcaagagggacggctcaaagtaaggaa |
29979622 |
T |
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| Q |
347 |
gatattgtggaaatcatagaatctgaccccaaaac |
381 |
Q |
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| T |
29979623 |
gatattgcggaaataatagaatctgacctcaaaac |
29979657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 381
Target Start/End: Original strand, 29993410 - 29993702
Alignment:
| Q |
82 |
agggaattttgggttttaaataggcattagtgaagtgccacgtcacttcaagaagggtacattacatccaccatggcccaaagagtcatgtgcacatgaa |
181 |
Q |
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| T |
29993410 |
agggaagttagggttttatataggcactcatgaggtggcacatcacttcaagaagggaacattacacccatcatgacctaaacagtcatttgcacccaaa |
29993509 |
T |
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| Q |
182 |
cacataaaaataataatcat--atggatatgggtgatcatgttgcatatta-aatagcaatatggcataaataacaaattaaagttgtaccataaattag |
278 |
Q |
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| T |
29993510 |
aa--taataataataat-atggatggatatgggtgatcatgttgcatatcagcttagcaatatggcataaataataaattaaagatatacaataga-tag |
29993605 |
T |
|
| Q |
279 |
attaagaaatatgaagacctaaataatgtacgtgtgctctggcaatagggacagctcgaagtaagcaagatattgtggaaatcatagaatctgaccccaa |
378 |
Q |
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| T |
29993606 |
ataaagaaatatg-ggagc---ataatgtacgtgt--agtggcaataaggaccacttgaagtgaacaagatattgtggaaatcgtagaatctgaccccaa |
29993699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 29973725 - 29973861
Alignment:
| Q |
45 |
gaatagggaaaaaggattatgatgaatggattgtatg----agggaattttgggttttaaataggcattagtgaagtgccacgtcacttcaagaagggta |
140 |
Q |
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| T |
29973725 |
gaatagagaaaaaggcttaagataaattgattgtatgtgcaagggaagttagggttttatataggcattcatgaggtgccacgtcacttcaagaagggga |
29973824 |
T |
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| Q |
141 |
cattacatccaccatggcccaaagagtcatgtgcaca |
177 |
Q |
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| T |
29973825 |
cattacacccatcatgacccaaacagtcatgtgcaca |
29973861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 378
Target Start/End: Original strand, 29973984 - 29974054
Alignment:
| Q |
308 |
acgtgtgctctggcaatagggacagctcgaagtaagcaagatattgtggaaatcatagaatctgaccccaa |
378 |
Q |
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| T |
29973984 |
acgtgtggtctggcaataaggatggttcgaagtgagcaagatattgtggaaatcgtagaatctgaccccaa |
29974054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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