View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_21 (Length: 378)
Name: NF6026_low_21
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 12031531 - 12031181
Alignment:
| Q |
19 |
tgttggccctagcatatgccattgcacaattaggatggatagctggtattgcaagtatattgatcttttcatgtatttctgttttcacttacagtcttgt |
118 |
Q |
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| T |
12031531 |
tgttggccctagcatatgccattgcacaattaggatggatagctggtattgcaagtatattgatcttttcatgtatttctgttttcacttacagtcttgt |
12031432 |
T |
|
| Q |
119 |
ggctgattgctataggtatccagatccagttaatggcaagagaaattattcttatatgcaagctgtcaaggtctacttaggtacactattcgactctttc |
218 |
Q |
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| T |
12031431 |
ggctgattgctataggtatccagatccagttaatggcaagagaaattattcttatatgcaagctgtcaaggtctacttaggtacactcttcgactctttc |
12031332 |
T |
|
| Q |
219 |
tccgtcctcgacatgagtttagaagtataatctaaaa----ttatgtctaaattttgtccgtgcggatatgtgtctatgaacattttgttatgtccagat |
314 |
Q |
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| T |
12031331 |
tccgtcctcgacatgagtttagaagtataatctaaaaatacgtacgtctaaatcttgtccgtgcggatatgtgtctatgaacattttgttatgtcgagat |
12031232 |
T |
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| Q |
315 |
tcacaatttcgataaaatgaaagtttttgtttagtagcgagcggccgagta |
365 |
Q |
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| T |
12031231 |
tcacaatttcgataaaatgaaagtttttgtttagtagcgagcggccgagta |
12031181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 241446 - 241628
Alignment:
| Q |
19 |
tgttggccctagcatatgccattgcacaattaggatggatagctggtattgcaagtatattgatcttttcatgtatttctgttttcacttacagtcttgt |
118 |
Q |
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| T |
241446 |
tgttggctctagcatgggccatggctcaactaggatggatagctggtatagccagtataataatctttgcatgcatctctgctttcacttacagtcttgt |
241545 |
T |
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| Q |
119 |
ggctgattgctataggtatccagatccagttaatggcaagagaaattattcttatatgcaagctgtcaaggtctacttaggta |
201 |
Q |
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| T |
241546 |
agctgattgctataggtatccagacccagttactggcaagagaaattatacttacatgcaagctgtcaagagctacttaggta |
241628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 223715 - 223533
Alignment:
| Q |
19 |
tgttggccctagcatatgccattgcacaattaggatggatagctggtattgcaagtatattgatcttttcatgtatttctgttttcacttacagtcttgt |
118 |
Q |
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||||||| ||||||| || || || ||| ||||||||||||||||||| || |||||| | | |||| ||| || ||| ||||||||||||||||||| |
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| T |
223715 |
tgttggctctagcatgggctatggctcaactaggatggatagctggtatagccagtatactaacctttgcatccatctctattttcacttacagtcttgt |
223616 |
T |
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| Q |
119 |
ggctgattgctataggtatccagatccagttaatggcaagagaaattattcttatatgcaagctgtcaaggtctacttaggta |
201 |
Q |
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| T |
223615 |
agctgattgctataggtttccagacccaatcactggtaaaagaaattatacttacatgcaagctgtcaagagctacttaggta |
223533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 51528560 - 51528634
Alignment:
| Q |
104 |
cacttacagtcttgtggctgattgctataggtatccagatccagttaatggcaagagaaattattcttatatgca |
178 |
Q |
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|||||||| |||| | |||||||| ||||| |||||||| ||||||||||||||||||| || |||||||||| |
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| T |
51528560 |
cacttacaatcttatagctgattgttatagatatccagactcagttaatggcaagagaaactacacttatatgca |
51528634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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