View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6026_low_23 (Length: 352)
Name: NF6026_low_23
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 40 - 341
Target Start/End: Complemental strand, 35263342 - 35263040
Alignment:
| Q |
40 |
catctgtgaaatactgaaatgaaatatgtgtagtgtaggaatgtt-agttttggtaggctccaattctcataccatacccatgtgttatgagtacgtact |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35263342 |
catctgtgaaatactgaaatgaaatatgtgtagtgtaggaatgtttagttttggtaggctccaattctcataccatacccatgtgttatgagtacgtact |
35263243 |
T |
|
| Q |
139 |
acatcacaaataaaatgtgtataattatatagtataaagtattttaactttaatgcaatgtatataaattgtgtctaatacagacaaagacaagctcgtg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35263242 |
acatcacaaataaaatgtgtataattatatagtataaagtattttaactttaatgcaatgtatataaattgtgtctaatacagacgaagacaagctcgtg |
35263143 |
T |
|
| Q |
239 |
gtattgcagtgtagtctattgtttgtattgtaagctactagtacacttactaaggaataaagacagctactcaaggacgatgttcatgttcaatatgttt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35263142 |
gtattgcagtgtagtctattgtttgtattgtaagctactagtacacttactaaggaataaagacagctactcaaggacgatgttcatgttcaatatgttt |
35263043 |
T |
|
| Q |
339 |
cat |
341 |
Q |
| |
|
||| |
|
|
| T |
35263042 |
cat |
35263040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University