View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6026_low_24 (Length: 347)
Name: NF6026_low_24
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 331
Target Start/End: Original strand, 18783058 - 18783364
Alignment:
| Q |
9 |
aaatgaaccagcaacggactcgacgttttagaaatgccaaagacaatgaaatgcgtgtaagtatttcatctatttgaaacaaataaaaaattgaatttat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18783058 |
aaatgaaccagcaacggactcgacgttttagaaatgtcaaagacgatgaaatgcgcgtaagtatttcatctatttgaaacaaataacaaattgaatttat |
18783157 |
T |
|
| Q |
109 |
aaaacagtagaatgatcaaggcttaatgattttttgaattaattgtatttataggaagtcgaggaagagagactaaggaaggaatttgaaatggaaggca |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18783158 |
aaaacagtagaatgatcaaggcttaa----------------ttgtatttataggaagtcgaggaagagagactaaggaaggaatttgaaatggaaggca |
18783241 |
T |
|
| Q |
209 |
aacaagttcttcctaaacaagaatgtgaagtgtcagattctaacataataacaccagggacagatttcatgcaccaaatttcaaaggctcttaagagtta |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18783242 |
aacaagttcttcctaaacaagaatgtgaagtgtcagattctaacataataacaccagggacagatttcatgcaccaaatttcaaacgctcttaagagtta |
18783341 |
T |
|
| Q |
309 |
catttcttcaaagatatcctctg |
331 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
18783342 |
catttcttcaaagatatcctctg |
18783364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 163 - 326
Target Start/End: Original strand, 22872553 - 22872715
Alignment:
| Q |
163 |
gaagtcgaggaagagagactaaggaaggaatttgaaatggaaggcaaacaagttcttcctaaacaagaatgtgaagtgtcagattctaacataataacac |
262 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
22872553 |
gaagccgaggaggagagactgaggaaggaatttgaaatggaag-caaacaaattcttcctaaacaagaatgtcaagtgtcagaatctaatataataacaa |
22872651 |
T |
|
| Q |
263 |
cagggacagatttcatgcaccaaatttcaaaggctcttaagagttacatttcttcaaagatatc |
326 |
Q |
| |
|
| |||||||| |||||||||||| ||| ||| |||||| ||||| || ||||||| |||||| |
|
|
| T |
22872652 |
ctgggacagaattcatgcaccaacttttcaagaatcttaaaagttatatctcttcaaggatatc |
22872715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 22872497 - 22872553
Alignment:
| Q |
9 |
aaatgaaccagcaacggactcgacgttttagaaatgccaaagacaatgaaatgcgtg |
65 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22872497 |
aaatgaataagcaaaggactagacgttttagaactgccaaagacaatgaaatgcgtg |
22872553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University