View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_29 (Length: 309)
Name: NF6026_low_29
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 14771937 - 14772215
Alignment:
| Q |
23 |
cgcagaaccatcccaatcgtcacggcaactccaactgcaatacaggtgtataatggattcagttaccataatagatttaacaactttaatatacaaagtt |
122 |
Q |
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| T |
14771937 |
cgcagaaccatcccaatcgtcatggcaactccaactgcaatacaggtgtataatggattaagttaccataatagatttaacaactttaatatacaaagtt |
14772036 |
T |
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| Q |
123 |
aaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcatacttaagagatcgacctatgagtctgtggtactgcttgcagg |
222 |
Q |
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| T |
14772037 |
aaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcatacataagagatcgacctatgagtctgtggtactgcttgcagg |
14772136 |
T |
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| Q |
223 |
ttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaattcggtgaaatatattcttcga |
303 |
Q |
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| T |
14772137 |
ttgtt--tcagcttcagtttttggaatgcttaaatgaggttgctcagcagcagttacaattcggtgaaatatattgttcga |
14772215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 297
Target Start/End: Original strand, 15014113 - 15014327
Alignment:
| Q |
83 |
agttaccataatagatttaacaacttta-atatacaaagttaaaaggaacttaacgaacaat-taacaagttaacctggaaaatgatatacctgaagcat |
180 |
Q |
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| T |
15014113 |
agttagcatgatagattgaaaaacttaatatatacaaagtcaaaagcaatttaatgaagaaactaacaagtaaacctaaaaaataatatacctgaaacaa |
15014212 |
T |
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| Q |
181 |
acttaagagatcgacctatgagtctgtggtactgcttgcaggttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttaca |
280 |
Q |
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| T |
15014213 |
acataagagatcgatctatgagtctgtggtactgcttgcatgttttt--ctaccttcagtttttggaatgtttaaatgagggtgctctgcagccgttaca |
15014310 |
T |
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| Q |
281 |
attcggtgaaatatatt |
297 |
Q |
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| T |
15014311 |
atttggtgaaatatatt |
15014327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 283
Target Start/End: Original strand, 17878747 - 17878933
Alignment:
| Q |
95 |
agatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcatacttaagagatcga |
194 |
Q |
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||||| || |||| ||||||||||||| ||||||||||||| |||||| |||||||| || ||| ||||||||||||| || ||| |||||||| |
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| T |
17878747 |
agattgaaaaactctaatatacaaagtcaaaaggaacttaatgaacaactaacaagtaaaatctaaaattgatatacctgaaacaaactgaagagatcct |
17878846 |
T |
|
| Q |
195 |
cctatgagtctgtggtactgcttgcaggttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaatt |
283 |
Q |
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| T |
17878847 |
tttatgagcctatggaacttcttgtgtctttttc--cagcttcagttactggaatgcttaaatgagggtgctcagcagcacttacaatt |
17878933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 36878948 - 36878894
Alignment:
| Q |
231 |
cagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaattcg |
285 |
Q |
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| T |
36878948 |
cagcttcagtttctggaatgcttaaatgaggatgctcggcagcagttacaattcg |
36878894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 51365227 - 51365277
Alignment:
| Q |
234 |
cttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaattc |
284 |
Q |
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|||||||||| ||||||||||||||||| | | ||||||| |||||||||| |
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| T |
51365227 |
cttcagttttaggaatgcttaaatgagggtgctcagcagcggttacaattc |
51365277 |
T |
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