View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6026_low_30 (Length: 305)
Name: NF6026_low_30
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 39236194 - 39236486
Alignment:
| Q |
1 |
cctaattcaggacactcactccagtcagttagccctgccgtcagtggcgatataactccttgtcctctcccaactataaaaaggccaaatacatcaccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39236194 |
cctaattcaggacactcactccagtcagttagccctgccgtcagcggtgatataactccttgtcctctcccaactataaaaaggccaaatacatcaccca |
39236293 |
T |
|
| Q |
101 |
tagaccttatcgccgcgacagtttcctcgccattgtttacaaccttttcaatatatgcaattgaatcatcattcacatggctcattgtgaaccaatgcaa |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39236294 |
tagaccttatcgctgcgacagtttcctcgccattgtttacaaccttttcaatatatgcaattgaatcatcattcacatggctcattgtgaaccaatgcaa |
39236393 |
T |
|
| Q |
201 |
aaacttctcatccatttgcttttcactatcttcttctgtttcaacatctaatactctttgtctatttacattgttatcacgggtactaatatt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39236394 |
aaacttctcatccatttgcttttcactatcttcttctgtttcaacatctaatactctttgtctatttacattgttatcacgggtactaatatt |
39236486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 44054336 - 44054413
Alignment:
| Q |
6 |
ttcaggacactcactccagtcagttagccctgccgtcagtggcgatataactccttgtcctctcccaactataaaaag |
83 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||| |||| ||| ||||| | |||| | ||||| |||||||||||||| |
|
|
| T |
44054336 |
ttcaggacactcactccaatcagtgagtcctgctgtcaatggtgatatcattcctcgacctcttccaactataaaaag |
44054413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University