View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_31 (Length: 285)
Name: NF6026_low_31
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 4581368 - 4581174
Alignment:
| Q |
1 |
aatattgaagaatttaaagtgaatttttgattgaatttgagaagggtacctgataggtgttatcaaatttatcatacatgaagcgagtgatgatgctggt |
100 |
Q |
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| T |
4581368 |
aatattgaagaattgaaagtgaatttttgattgaatctgagaagggtacctgataggtgttatcaaatttatcgtacatgaagcgagtgatgatgctggt |
4581269 |
T |
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| Q |
101 |
tttaccaacagattggtcacccaagaataccagtttgtactttgctaatgctgatactggcgccattttcaaatccaattaatattgtttcaatt |
195 |
Q |
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| T |
4581268 |
tttaccaacagattggtcacccaaaaataccagtttgtactttgctaatgctgatactggcgccattttcaaatccaattaatattgtttcaatt |
4581174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 40880748 - 40880871
Alignment:
| Q |
45 |
ggtacctgataggtgttatcaaatttatcatacatgaagcgagtgatgatgctggttttaccaacagattggtcacccaagaataccagtttgtactttg |
144 |
Q |
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| T |
40880748 |
ggtacctgataagtgttatcgaatttgtcgtacataaagcgagtgatgatgctggttttaccgacggattgatcgccgaggaaaaccaatttgtacttcg |
40880847 |
T |
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| Q |
145 |
ctaatgctgatactggcgccattt |
168 |
Q |
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| T |
40880848 |
cgagagctgaaactggcgccattt |
40880871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 39529952 - 39530043
Alignment:
| Q |
48 |
acctgataggtgttatcaaatttatcatacatgaagcgagtgatgatgctggttttaccaacagattggtcacccaagaataccagtttgta |
139 |
Q |
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| T |
39529952 |
acctgataggtagtgtcgaatttatcatacataaagcgagtgatgatgctagttttaccaacggattgatcacctaagaaaacgagtttgta |
39530043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 37854157 - 37854224
Alignment:
| Q |
48 |
acctgataggtgttatcaaatttatcatacatgaagcgagtgatgatgctggttttaccaacagattg |
115 |
Q |
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| T |
37854157 |
acctgataggtggtgtcaaatttgtcgtacatgaagcgggtgatgatactggttttgccaacggattg |
37854224 |
T |
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