View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_33 (Length: 280)
Name: NF6026_low_33
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 280
Target Start/End: Complemental strand, 40878345 - 40878076
Alignment:
| Q |
12 |
gaaaatggtgtaaccatgaaaacagtttatatggggttgtgtggaggagtgatgcagtcacaacaatgattgtaaa-gcactctgcatgcacgtgcgacc |
110 |
Q |
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| T |
40878345 |
gaaaatggtgtaaccatgaaaacagtt-atatggggttgtgtggaggagtgatgcagtcacaacaatgattgtaaaagctctctgcatgcacgtgcgacc |
40878247 |
T |
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| Q |
111 |
atgaacctt-acacttactgatccgatccaagtcatagggatcaatgacataactaactcacagtcacagacatattgtataaagtcaaaatttcagaaa |
209 |
Q |
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| T |
40878246 |
atgaacctttacacttactgatctgatcctagtcatagggatcaatgacataactaactcacagtcacagacatattgtataaagtcaaaatttcagaaa |
40878147 |
T |
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| Q |
210 |
caacaacgtactagtacccgatttgtgtaatgccaaaatgtccaaataaatactactagtactaacaccat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878146 |
caacaacgtactagtacccgatttgtgtaatgccaaaatgtccaaataaatactactagtactaacaccat |
40878076 |
T |
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