View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_34 (Length: 267)
Name: NF6026_low_34
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_34 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 37665620 - 37665512
Alignment:
| Q |
129 |
catgtaaattctctaaaattcgtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagtta |
228 |
Q |
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| T |
37665620 |
catgtaaattctctaaaattcgtagcattaccattgttcatgacattaaggataaactcatttggagtacttcttcaaatgattaatactcaactagtta |
37665521 |
T |
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| Q |
229 |
aggatatag |
237 |
Q |
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| T |
37665520 |
aggatatag |
37665512 |
T |
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Target: scaffold0244 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 14960 - 14862
Alignment:
| Q |
150 |
gtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatc |
248 |
Q |
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| T |
14960 |
gtagcattaccattgatcatgacaccgaggataaactcatttggagtgcttctccaaatggtcaatactcatctagttatggatataggtggtttgatc |
14862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 1260280 - 1260178
Alignment:
| Q |
146 |
attcgtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttag |
245 |
Q |
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| T |
1260280 |
attcgtagcattaccattgatcatgacaccgaagataaactcatttgaagtgcttctccaaatggtcaatactcagctagttatggatataggtggtttg |
1260181 |
T |
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| Q |
246 |
atc |
248 |
Q |
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||| |
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| T |
1260180 |
atc |
1260178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 53910603 - 53910685
Alignment:
| Q |
166 |
tcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatc |
248 |
Q |
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| T |
53910603 |
tcatgacattgaggatagactcatttggagtgcttctttagatggccaatactcaactagttattgatatatgtggttagatc |
53910685 |
T |
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