View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6026_low_37 (Length: 255)
Name: NF6026_low_37
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 53975752 - 53975533
Alignment:
| Q |
20 |
gaaggtgtacggttaaagacaatagagtgggcgattaagggatgagttgacagagagaaagtatggtggtactggtgggtgagtgggggagagaatggtg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53975752 |
gaaggtgtacggttaaagacaatagagtgggcgattaagggatgagttgacagaaagaaagtatggtggtactggtgggtgagtgggggagagaatggtg |
53975653 |
T |
|
| Q |
120 |
gtggaggaagtgtgtat------nnnnnnnntagtgctgataatgtatgataattgtgtatctgatttaatctaatgtgccatgattctttttggagtac |
213 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53975652 |
gtggaggaagtgtgcataaaaaaaaaaaaaaaaatgctgataatgtatgataattgtgtgtctgatttaatctaatgtgccatgactctttttggagtac |
53975553 |
T |
|
| Q |
214 |
gatgagccttgatttgagtt |
233 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
53975552 |
gatgagccttgatttgagtt |
53975533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 53981247 - 53981281
Alignment:
| Q |
199 |
ttctttttggagtacgatgagccttgatttgagtt |
233 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
53981247 |
ttctttttggagtacgatgaaccttgatttgagtt |
53981281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 35154259 - 35154460
Alignment:
| Q |
21 |
aaggtgtacggttaaagacaatagagtgggcgattaagggatgagttgacagagagaaagtatggtggtactggtgggtgagtgggggagagaatggtgg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35154259 |
aaggtgtacggttaaagacaatagagtgggcgattaagagacgagttgatggagagaaagtatggtggtactggtgggtgag--------agaatggtgg |
35154350 |
T |
|
| Q |
121 |
tggaggaagtgtgtatnnnnnnnn---tagtgctgataatgtatgataattgtgtatctgatttaatctaatgtgccatgattctttttggagtacgatg |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35154351 |
---aggaagtgtgtataaaaaaaaaattagtgctgataatgtatgataatagtgtgtctaatttaatctaatgtgccatgattctttttggagtacgatg |
35154447 |
T |
|
| Q |
218 |
agccttgatttga |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35154448 |
agccttgatttga |
35154460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 35153761 - 35153727
Alignment:
| Q |
199 |
ttctttttggagtacgatgagccttgatttgagtt |
233 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
35153761 |
ttctttttggagtacgatgaaccttgatttgagtt |
35153727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 44677023 - 44676994
Alignment:
| Q |
20 |
gaaggtgtacggttaaagacaatagagtgg |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44677023 |
gaaggtgtacggttaaagacaatagagtgg |
44676994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University