View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_4 (Length: 713)
Name: NF6026_low_4
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 13 - 697
Target Start/End: Original strand, 34649508 - 34650191
Alignment:
| Q |
13 |
gagagacggtgtgtaaaataaaattgtatcaaaagtattttagtaattttctatatgaaataaataaatacagctatgggtctatgaagagatctttcat |
112 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34649508 |
gagagatggtgtgtaaaataaaattgtatcaagagtattttagtaattttctatatgaaataaataaatacagctatggatctatgaagagatctttcat |
34649607 |
T |
|
| Q |
113 |
ggaggttagtgttcgaaacctaatcaccccgatttattatctactagattcaggcaaaactctaaattaatacaacttatttccttaaaaactagaggat |
212 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
34649608 |
ggaggttagtgttcgaaacctaatcatccagatttattatctattggattcaggcaaaactctaaattaatacagcttctttccttaaaaactagaggat |
34649707 |
T |
|
| Q |
213 |
taagaagnnnnnnnntacagtgaatgtcctaccactcatttgatagtgtttaacaacaaacatactttattagtnnnnnnngacagacaaacaaacatgc |
312 |
Q |
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| T |
34649708 |
taagaagaaaaaaaatacagtgaatgtcctaccactcatttgatagtgtttaacaacaaacatactttattagtaaaaga-gacagacaaacaaacatgc |
34649806 |
T |
|
| Q |
313 |
attgaatgaatagagaatatttttcagaatcgcgctatctattttgtgatgttataaaacgttttctagaaaatgtgctatacaatattagccnnnnnnn |
412 |
Q |
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| T |
34649807 |
attgaatgaatagagaacatttttcagagtcgcgctatctattttatgatgttataaaacgttttctagaaaatgtgctatacaatattagccaaaaaaa |
34649906 |
T |
|
| Q |
413 |
nnnnnntaagtaatgcataatatacattattatgaagttttttataagcaaacttttattaagataactaaagtttacaaagaaattagtgccacaaagc |
512 |
Q |
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| T |
34649907 |
taaaaataagtaatgcataatatacattataatgaagttttttataagcaaacttttattaagataactaaagtttacaaagaaattagtgccacaaagc |
34650006 |
T |
|
| Q |
513 |
caaattaaaatacataatggacaaaactaaatgccgcatcattgctcccatccaacacataacagaaccagaaaagcataatgatacccccattgttact |
612 |
Q |
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| T |
34650007 |
caaattagaatacataatggacaaaactaaatgccgcatcattgctcccatccaacacattacagaaccagaaaagcataatgatacccccattgttact |
34650106 |
T |
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| Q |
613 |
aattaacaacgataaaatctgagagtccacgaattctgagtggtgtttactgctgagtgttgattgatatgatatattccaatcc |
697 |
Q |
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| T |
34650107 |
aattaacaacgataaaatctgagagtccacgaattctgagtggtgtttactgctgagtgttgattgatatgatatattccaatcc |
34650191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 28467641 - 28467587
Alignment:
| Q |
14 |
agagacggtgtgtaaaataaaattgtatcaaaagtattttagtaattttctatat |
68 |
Q |
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|||||| | ||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
28467641 |
agagactgcgtgtaaaataaaattatatcaagagtattttagtaattttctatat |
28467587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 24214103 - 24214058
Alignment:
| Q |
23 |
gtgtaaaataaaattgtatcaaaagtattttagtaattttctatat |
68 |
Q |
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|||||||||||||||||||||| | ||||||| ||||||||||||| |
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| T |
24214103 |
gtgtaaaataaaattgtatcaagaatattttaataattttctatat |
24214058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 10965209 - 10965250
Alignment:
| Q |
26 |
taaaataaaattgtatcaaaagtattttagtaattttctata |
67 |
Q |
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| T |
10965209 |
taaaataaaattgtataaagagtattttaataattttctata |
10965250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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