View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_42 (Length: 245)
Name: NF6026_low_42
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 38374503 - 38374290
Alignment:
| Q |
13 |
aatatgagttgagaccaaaactgcaaaaaatgtgatacttgaggaccaaaaagtttgattttaaaagatgataaatatgttttcgtttctatgataaaat |
112 |
Q |
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| T |
38374503 |
aatatgagttgagaccaaaactgcaaaaaatgtgatacttgaggaccaaaaagtttgattttaaaagatgataaatatgttttcgtttctatgataaaat |
38374404 |
T |
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| Q |
113 |
aggaggcaaagaatttcaattaagtctatgttatatattaccggtttgtatcgacccctctcataatatgtnnnnnnntcagattgagagcgaatcaatt |
212 |
Q |
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| T |
38374403 |
aggaggtaaagaatttcaattaagcctatgttatatattaccggtttgtatcgatccctctcataatatgtaaaaaaatcagtttgagagcgaatcaatt |
38374304 |
T |
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| Q |
213 |
tgcatatcgtgctt |
226 |
Q |
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| T |
38374303 |
tgcatatcgtgctt |
38374290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 35053196 - 35053249
Alignment:
| Q |
25 |
gaccaaaactgcaaaaaatgtgatacttgaggaccaaaaagtttgattttaaaa |
78 |
Q |
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|||||||| |||||||||||||| | | ||||||||||||||| ||||||||| |
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| T |
35053196 |
gaccaaaattgcaaaaaatgtgaaattagaggaccaaaaagttcaattttaaaa |
35053249 |
T |
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