View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6026_low_44 (Length: 241)

Name: NF6026_low_44
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6026_low_44
NF6026_low_44
[»] chr2 (3 HSPs)
chr2 (14-215)||(28622569-28622770)
chr2 (14-215)||(28623543-28623744)
chr2 (14-223)||(28619120-28619331)
[»] chr6 (1 HSPs)
chr6 (14-223)||(14648881-14649091)
[»] scaffold0018 (1 HSPs)
scaffold0018 (14-223)||(127169-127381)
[»] chr7 (1 HSPs)
chr7 (14-223)||(20026758-20026965)
[»] chr1 (2 HSPs)
chr1 (14-126)||(48974528-48974640)
chr1 (121-223)||(48973087-48973189)
[»] chr8 (2 HSPs)
chr8 (18-119)||(6764313-6764414)
chr8 (158-223)||(6764447-6764513)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 28622770 - 28622569
Alignment:
Q  14 gaaggatggaatggttgatgaaagtgtccagaaagtatatgaagaatgtgtaagtattatttttatttaatttgattctgaaaatttattgttacttcat 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28622770 gaaggatggaatggttgatgaaagtgtccagaaaatatatgaagaatgtgtaagtattatttttatttaatttgattctaaaaatttattgttacttcat 28622671  T
Q  114 ataaaacttgtgaaattttttataaagatcttattttttccgtcctaccgtatattattccaggtcactctatctcaatcttctcaaacttctagttgta 213  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28622670 ataaaacttgtgaaattttttatgacgatcttattttttccgtcctaccatatattattccaggtcactctatctcaatcttctcaaacttctagttgta 28622571  T
Q  214 gg 215  Q
    ||    
T  28622570 gg 28622569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 28623744 - 28623543
Alignment:
Q  14 gaaggatggaatggttgatgaaagtgtccagaaagtatatgaagaatgtgtaagtattatttttatttaatttgattctgaaaatttattgttacttcat 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28623744 gaaggatggaatggttgatgaaagtgtccagaaaatatatgaagaatgtgtaagtattatttttatttaatttgattctaaaaatttattgttacttcat 28623645  T
Q  114 ataaaacttgtgaaattttttataaagatcttattttttccgtcctaccgtatattattccaggtcactctatctcaatcttctcaaacttctagttgta 213  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28623644 ataaaacttgtgaaattttttatgacgatcttattttttccgtcctaccatatattattccaggtcactctatctcaatcttctcaaacttctagttgta 28623545  T
Q  214 gg 215  Q
    ||    
T  28623544 gg 28623543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 28619120 - 28619331
Alignment:
Q  14 gaaggatggaatggttgatgaaagtgtccagaaagtatatgaagaatgtgtaagtattatttttatttaatttgattctgaaaatttattgttacttcat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28619120 gaaggatggaatggttgatgaaagtgtccagaaagtatatgaagaatgtgtaagtattatttttatttaatttgattctaaaaatttattgttacttcat 28619219  T
Q  114 ataaaacttgtgaaattttttataaagatctta-ttttttccgtcctaccgtatattattccaggtcactctatctcaatcttctcaaacttctagttgt 212  Q
    ||||||||||||||||||||||| | || |||| |||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||| |||    
T  28619220 ataaaacttgtgaaattttttatgacgagcttatttttttccatcctaccatatattatttcaggtgactctatctcaatcttctcaaacttttagctgt 28619319  T
Q  213 agg-acatactt 223  Q
    ||| ||||||||    
T  28619320 aggcacatactt 28619331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 14649091 - 14648881
Alignment:
Q  14 gaaggatggaatggttgatgaaagtgtccagaaagtatatgaagaatgtgtaagtattatttttatttaatttgattctgaaaatttattgttacttcat 113  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14649091 gaaggatggaacggttgatgaaactgtccagaaagtatatgaagaatgtgtaagtattatttttatttaatttgattctgaaaatttattggtacttcat 14648992  T
Q  114 ataaaacttgtgaaattttttataaagatcttattttttccgtcctaccgtatattattccaggtcactctatctcaatcttctcaaacttctagttgta 213  Q
    ||||||||||||||||||||||| | ||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  14648991 ataaaacttgtgaaattttttatgacgatcttatttttttcgtactaccatatattattccaggtgactctatctcaatcttgtcaaacttctagctgta 14648892  T
Q  214 -ggacatactt 223  Q
     ||||||||||    
T  14648891 gggacatactt 14648881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 127381 - 127169
Alignment:
Q  14 gaaggatggaatggttgatgaaagtgtccagaaagtatatgaagaatgtgtaagtattatttttatttaatttgattctgaaaatttattgttacttcat 113  Q
    |||||||| ||  |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  127381 gaaggatgaaacagttgatgaaactgtccagaaagtatatgaagaatgtataagtattatttttatttaatttgattctgaaaatttattgttacttcat 127282  T
Q  114 ataaaacttgtgaaatt-ttttataaagatctta-ttttttccgtcctaccgtatattattccaggtcactctatctcaatcttctcaaacttctagttg 211  Q
    ||||||||||||||||| |||||| |  |||||| |||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  127281 ataaaacttgtgaaatttttttatgacaatcttattttttttcgtactaccatatattattccaggtgactctatctcaatcttctcaaacttctagctg 127182  T
Q  212 ta-ggacatactt 223  Q
    || ||||||||||    
T  127181 tagggacatactt 127169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 20026758 - 20026965
Alignment:
Q  14 gaaggatggaatggttgatgaaagtgtccagaaagtatatgaagaatgtgtaagtattatttttatttaatttgattctgaaaatttattgttacttcat 113  Q
    |||||||| | |||||||||||||||| || ||| ||||||||||||||| ||| ||||||| |||||    |||||||||||||||||||||||||||     
T  20026758 gaaggatgaagtggttgatgaaagtgtgcaaaaattatatgaagaatgtgaaagaattatttctattt----tgattctgaaaatttattgttacttcaa 20026853  T
Q  114 ataaaacttgtgaaatttttt-ataaagatcttattttttccgtcctaccgtatattattccaggtcactctatctcaatcttctcaaacttctagttgt 212  Q
    |||||||||||| | |||||| | ||   ||||||||||||||| ||||| ||||||||| ||||| |||||||||||||||| |||||||||||| |||    
T  20026854 ataaaacttgtgtattttttttacaaccgtcttattttttccgtactaccatatattatttcaggtgactctatctcaatcttttcaaacttctagctgt 20026953  T
Q  213 a-ggacatactt 223  Q
    | ||||||||||    
T  20026954 agggacatactt 20026965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 48974640 - 48974528
Alignment:
Q  14 gaaggatggaatggttgatgaaagtgtccagaaagtatatgaagaatgtgtaagtattatttttatttaatttgattctgaaaatttattgttacttcat 113  Q
    |||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  48974640 gaaggatgaaatggttgatgagagcgtccagaaagtatatgaagaatgtgtaagtattatttctatttaatttgattctaaaaatttattgttacttcat 48974541  T
Q  114 ataaaacttgtga 126  Q
    |||||| ||||||    
T  48974540 ataaaatttgtga 48974528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 48973189 - 48973087
Alignment:
Q  121 ttgtgaaattttttataaagatcttattttttccgtcctaccgtatattattccaggtcactctatctcaatcttctcaaacttctagttgta-ggacat 219  Q
    ||||||| |||||||| | |||||| ||||||| || ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  48973189 ttgtgaatttttttatgacgatctt-ttttttctgtactaccatatattatttcaggtgactctatctcaatcttctcaaacttctagttgtagggacat 48973091  T
Q  220 actt 223  Q
    ||||    
T  48973090 actt 48973087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 6764313 - 6764414
Alignment:
Q  18 gatggaatggttgatgaaagtgtccagaaagtatatgaagaatgtgtaagtattatttttatttaatttgattctgaaaatttattgttacttcatataa 117  Q
    ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  6764313 gatggaacggttgatgaaagtgtccagaaagtgtatgcagaatgtgtaagtattatttctatttaatttgattatgaacatttattgttacttcatataa 6764412  T
Q  118 aa 119  Q
    ||    
T  6764413 aa 6764414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 6764447 - 6764513
Alignment:
Q  158 ctaccgtatattattccaggtcactctatctcaatcttctcaaacttctagttgta-ggacatactt 223  Q
    ||||| ||||||||| ||||| |||||||||||||||||| |||||||||| |||| ||||||||||    
T  6764447 ctaccatatattatttcaggtgactctatctcaatcttctgaaacttctagctgtagggacatactt 6764513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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