View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6026_low_45 (Length: 240)
Name: NF6026_low_45
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 35684496 - 35684273
Alignment:
| Q |
1 |
ataagttataaatatatcagtcctgatttgaagtgtgtgtaatcatattatgttactacgtgaatgaaaaagtgtaaaatgattaattctttagatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35684496 |
ataagttataaatatatcagtcctgatttgaagtgtgtgtaatcatattatgttactacgtgaaggaaaaagtgtaaaatgattaattctttagatgaaa |
35684397 |
T |
|
| Q |
101 |
acaatccttttcaagagatataattcttatgataaatggaatgaaagagaaagagctctcattttctcccctaaggctctgtttggataatcagcttaat |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
35684396 |
acgatccttttcaagagatataattcttatgataaatggaatgaaagagaaagagatctcattttctcccctaaggatatgtttggataatcagcttaat |
35684297 |
T |
|
| Q |
201 |
taagtgtctatagcataaacattt |
224 |
Q |
| |
|
||||||| ||||||||||| |||| |
|
|
| T |
35684296 |
taagtgtatatagcataaaaattt |
35684273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 52734714 - 52734750
Alignment:
| Q |
183 |
ttggataatcagcttaattaagtgtctatagcataaa |
219 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
52734714 |
ttggataaacagcttaattaagtgtttatagcataaa |
52734750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 20685322 - 20685213
Alignment:
| Q |
1 |
ataagttataaatatatcagtcctgatttgaagtgtgtgtaatcatattatgttactacgtgaatgaaaaagtgtaaaatgattaattctttagatgaaa |
100 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||| |
|
|
| T |
20685322 |
ataatttagaaatataccagtcctgatttgaagcgtgt--aatcatattatgttactacgtgaatgaaaaagtgcaagatgattaactctttagataaaa |
20685225 |
T |
|
| Q |
101 |
acaatccttttc |
112 |
Q |
| |
|
||| || ||||| |
|
|
| T |
20685224 |
acagtcattttc |
20685213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 753395 - 753349
Alignment:
| Q |
178 |
tctgtttggataatcagcttaattaagtgtctatagcataaacattt |
224 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
753395 |
tctgtttggataaacaacttaattaagtgtttatagcataaacattt |
753349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 30237935 - 30237897
Alignment:
| Q |
180 |
tgtttggataatcagcttaattaagtgtctatagcataa |
218 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
30237935 |
tgtttggataaacaacttaattaagtgtctatagcataa |
30237897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 16945173 - 16945133
Alignment:
| Q |
179 |
ctgtttggataatcagcttaattaagtgtctatagcataaa |
219 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
16945173 |
ctgtttggataaacagcctaattaagtgtttatagcataaa |
16945133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University