View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_48 (Length: 237)
Name: NF6026_low_48
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23576558 - 23576778
Alignment:
| Q |
1 |
ctatcaactaaaaaatatactaaagcactcattcaacgcgttggcacaatctttacgatccggtcaaaagattagaccgaacatgttacaaatttataaa |
100 |
Q |
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| T |
23576558 |
ctatcaaccaaaaaatatactaaatcagacattcgacacattgacacagtctttaccatccggtcaaaagattagaccgaacatgttacaaatttataaa |
23576657 |
T |
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| Q |
101 |
tttgattaaatatactaagtcaaacttgaaatcgtctgattttgatttgatagtaggtgcatgaaatctaaatctattcgatcggataaatgaaatattt |
200 |
Q |
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| T |
23576658 |
tttgattaaatatactaagtcaaacttgaaatcgtctgattttgatttgatagttggtgcatgaaatctaaatctattagatcggataaatgaaatattt |
23576757 |
T |
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| Q |
201 |
atgtcaagtaattgtggattt |
221 |
Q |
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|||| |||||||||||||||| |
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| T |
23576758 |
atgttaagtaattgtggattt |
23576778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 23596172 - 23596344
Alignment:
| Q |
50 |
tctttacgatccggtcaaaagattagaccgaacatgttacaaatttataaatttgattaaatatactaagtca-aacttgaaatcgtctgattttgattt |
148 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||| |||||||||||||| ||||||||||| |
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| T |
23596172 |
tctttaccatccggtcaaaagattagaccgaacatgttacaaatttataaactggattaaaaataccaagtcagaacttgaaatcgtcagattttgattt |
23596271 |
T |
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| Q |
149 |
gatagtaggtgcatgaaatctaaatctattcgatcggataaatgaaatatttatgtcaagtaattgtggattt |
221 |
Q |
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| T |
23596272 |
gatcgttggtgcatgaaatctaaatctatttgatcggatgaatgaaatatttatgttgagaaattgtggattt |
23596344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 23605094 - 23605266
Alignment:
| Q |
50 |
tctttacgatccggtcaaaagattagaccgaacatgttacaaatttataaatttgattaaatatactaagtca-aacttgaaatcgtctgattttgattt |
148 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||| |||||||||||||| ||||||||||| |
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| T |
23605094 |
tctttaccatccggtcaaaagattagaccgaacatgttacaaatttataaactggattaaaaataccaagtcagaacttgaaatcgtcagattttgattt |
23605193 |
T |
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| Q |
149 |
gatagtaggtgcatgaaatctaaatctattcgatcggataaatgaaatatttatgtcaagtaattgtggattt |
221 |
Q |
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| T |
23605194 |
gatcgttggtgcatgaaatctaaatctatttgatcggatgaatgaaatatttatgttgagaaattgtggattt |
23605266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 23566217 - 23566284
Alignment:
| Q |
137 |
tgattttgatttgatagtaggtgcatgaaatctaaatctattcgatcggataaatgaaatatttatgt |
204 |
Q |
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| T |
23566217 |
tgattttgatctgatggtcggtgcatgaaatctaaagttattagatctgatgaatgaaatatttatgt |
23566284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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