View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6026_low_5 (Length: 701)

Name: NF6026_low_5
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6026_low_5
NF6026_low_5
[»] chr2 (42 HSPs)
chr2 (18-692)||(30736479-30737147)
chr2 (203-355)||(30868706-30868859)
chr2 (68-197)||(34107268-34107391)
chr2 (68-203)||(39334859-39334988)
chr2 (100-155)||(30811842-30811897)
chr2 (84-198)||(22014646-22014759)
chr2 (210-264)||(30681345-30681399)
chr2 (68-121)||(35352382-35352435)
chr2 (68-143)||(32256178-32256253)
chr2 (68-139)||(38581584-38581655)
chr2 (68-155)||(18386792-18386877)
chr2 (77-129)||(45314466-45314518)
chr2 (84-123)||(44487761-44487800)
chr2 (68-114)||(20942087-20942133)
chr2 (68-129)||(38242667-38242728)
chr2 (71-123)||(1244631-1244683)
chr2 (84-116)||(17896887-17896919)
chr2 (83-198)||(22355076-22355185)
chr2 (68-199)||(29034967-29035091)
chr2 (165-197)||(29664596-29664628)
chr2 (302-346)||(30681269-30681313)
chr2 (84-123)||(2057541-2057580)
chr2 (71-153)||(11837021-11837101)
chr2 (75-114)||(18089800-18089839)
chr2 (80-155)||(37123216-37123291)
chr2 (77-156)||(37516019-37516098)
chr2 (154-192)||(8080728-8080766)
chr2 (84-118)||(34644479-34644513)
chr2 (84-121)||(5807761-5807798)
chr2 (71-155)||(8234775-8234857)
chr2 (71-112)||(12206571-12206612)
chr2 (154-191)||(25071210-25071247)
chr2 (165-198)||(34034343-34034376)
chr2 (71-155)||(36426839-36426921)
chr2 (84-116)||(2971135-2971167)
chr2 (154-198)||(5772853-5772897)
chr2 (72-116)||(14307676-14307720)
chr2 (68-116)||(23664038-23664086)
chr2 (72-155)||(23683726-23683807)
chr2 (165-201)||(23984265-23984301)
chr2 (95-155)||(32288406-32288466)
chr2 (71-139)||(32677375-32677443)
[»] chr3 (40 HSPs)
chr3 (68-198)||(40160728-40160852)
chr3 (71-155)||(50724397-50724479)
chr3 (71-155)||(50788369-50788451)
chr3 (80-188)||(23237365-23237467)
chr3 (69-196)||(6951770-6951890)
chr3 (96-194)||(31680729-31680821)
chr3 (71-193)||(36331709-36331824)
chr3 (83-155)||(16985050-16985122)
chr3 (100-155)||(16277961-16278016)
chr3 (154-201)||(16874248-16874295)
chr3 (68-198)||(24130552-24130676)
chr3 (164-198)||(9684992-9685026)
chr3 (71-113)||(21142714-21142756)
chr3 (84-121)||(33533267-33533304)
chr3 (87-156)||(55318046-55318115)
chr3 (84-198)||(26583094-26583203)
chr3 (154-194)||(38507645-38507685)
chr3 (80-116)||(38507715-38507751)
chr3 (69-129)||(42665904-42665964)
chr3 (154-197)||(12236593-12236636)
chr3 (96-147)||(31902211-31902262)
chr3 (96-147)||(31917873-31917924)
chr3 (68-115)||(43911676-43911723)
chr3 (165-199)||(10959124-10959158)
chr3 (83-200)||(32080046-32080157)
chr3 (84-129)||(4045628-4045673)
chr3 (165-198)||(9624975-9625008)
chr3 (71-116)||(21248971-21249016)
chr3 (165-198)||(27183751-27183784)
chr3 (105-146)||(31435516-31435557)
chr3 (71-155)||(33206787-33206869)
chr3 (71-155)||(43566779-43566861)
chr3 (164-197)||(46845011-46845044)
chr3 (71-197)||(47191366-47191485)
chr3 (165-198)||(55494682-55494715)
chr3 (71-123)||(4478349-4478401)
chr3 (100-156)||(9167281-9167337)
chr3 (165-197)||(14868678-14868710)
chr3 (84-116)||(28951935-28951967)
chr3 (154-194)||(46416281-46416321)
[»] chr1 (44 HSPs)
chr1 (68-191)||(43020611-43020728)
chr1 (71-198)||(9768790-9768911)
chr1 (71-190)||(9769561-9769674)
chr1 (71-197)||(41677054-41677174)
chr1 (68-197)||(48260167-48260290)
chr1 (68-199)||(7906304-7906429)
chr1 (71-197)||(2643796-2643916)
chr1 (68-155)||(23973460-23973547)
chr1 (84-197)||(4511519-4511626)
chr1 (76-132)||(3046155-3046211)
chr1 (84-136)||(3261907-3261959)
chr1 (68-128)||(19866532-19866592)
chr1 (73-187)||(3341719-3341827)
chr1 (71-129)||(9976365-9976423)
chr1 (71-155)||(4354088-4354170)
chr1 (71-132)||(9163336-9163396)
chr1 (68-121)||(38028601-38028654)
chr1 (68-199)||(1721132-1721257)
chr1 (95-155)||(2085821-2085881)
chr1 (71-123)||(12553256-12553308)
chr1 (154-198)||(18003809-18003853)
chr1 (71-123)||(50199457-50199509)
chr1 (77-116)||(26349966-26350005)
chr1 (98-198)||(29491462-29491557)
chr1 (68-121)||(195108-195161)
chr1 (84-129)||(13941375-13941420)
chr1 (71-155)||(15774295-15774377)
chr1 (165-198)||(19976622-19976655)
chr1 (165-198)||(25819177-25819210)
chr1 (165-198)||(39238708-39238741)
chr1 (165-198)||(40678815-40678848)
chr1 (84-129)||(40679841-40679886)
chr1 (68-129)||(48565125-48565186)
chr1 (164-197)||(49503190-49503223)
chr1 (71-116)||(49632356-49632401)
chr1 (68-116)||(50755413-50755459)
chr1 (165-197)||(2052752-2052784)
chr1 (68-116)||(2903005-2903053)
chr1 (165-197)||(9527419-9527451)
chr1 (154-198)||(18179321-18179365)
chr1 (72-123)||(39994832-39994881)
chr1 (165-197)||(39995619-39995651)
chr1 (72-123)||(42832009-42832058)
chr1 (68-123)||(50859347-50859400)
[»] chr4 (33 HSPs)
chr4 (68-198)||(54854157-54854281)
chr4 (69-198)||(49039424-49039547)
chr4 (71-191)||(20610739-20610853)
chr4 (68-201)||(41492477-41492603)
chr4 (100-155)||(16201326-16201381)
chr4 (74-155)||(32048544-32048624)
chr4 (69-122)||(33359880-33359933)
chr4 (71-143)||(18497434-18497506)
chr4 (75-194)||(27921893-27922006)
chr4 (68-123)||(23226683-23226738)
chr4 (72-197)||(49319387-49319507)
chr4 (68-129)||(21476061-21476120)
chr4 (91-199)||(29785142-29785244)
chr4 (70-197)||(36257688-36257807)
chr4 (72-123)||(30616062-30616111)
chr4 (71-155)||(47416498-47416582)
chr4 (68-123)||(6202665-6202720)
chr4 (77-116)||(6481571-6481610)
chr4 (85-199)||(36045822-36045930)
chr4 (68-121)||(39293592-39293646)
chr4 (84-114)||(39449470-39449500)
chr4 (164-197)||(30696721-30696754)
chr4 (68-197)||(42411433-42411556)
chr4 (164-193)||(43323784-43323813)
chr4 (165-198)||(48512191-48512224)
chr4 (165-198)||(53815688-53815721)
chr4 (69-124)||(8998356-8998411)
chr4 (165-197)||(28520801-28520833)
chr4 (84-155)||(35112738-35112807)
chr4 (165-197)||(36008268-36008300)
chr4 (154-198)||(38657533-38657577)
chr4 (154-194)||(40261181-40261221)
chr4 (100-156)||(44975937-44975993)
[»] chr7 (38 HSPs)
chr7 (68-201)||(7392284-7392411)
chr7 (77-194)||(35498395-35498505)
chr7 (70-123)||(10958095-10958148)
chr7 (68-121)||(32309126-32309179)
chr7 (84-120)||(41000825-41000861)
chr7 (68-200)||(29658252-29658377)
chr7 (77-198)||(35195836-35195951)
chr7 (72-132)||(21925528-21925586)
chr7 (72-121)||(26734253-26734302)
chr7 (95-132)||(32994448-32994485)
chr7 (154-194)||(10958036-10958076)
chr7 (154-193)||(8147244-8147283)
chr7 (68-147)||(16916495-16916574)
chr7 (72-155)||(25711114-25711196)
chr7 (154-197)||(27726427-27726470)
chr7 (72-122)||(1649215-1649265)
chr7 (75-197)||(4169069-4169184)
chr7 (87-117)||(11651116-11651146)
chr7 (78-116)||(19924836-19924874)
chr7 (76-153)||(20947793-20947868)
chr7 (68-121)||(47355873-47355927)
chr7 (74-128)||(47514260-47514314)
chr7 (68-116)||(5787530-5787576)
chr7 (165-198)||(14818435-14818468)
chr7 (165-198)||(15265433-15265466)
chr7 (71-197)||(21285336-21285455)
chr7 (71-155)||(37449493-37449575)
chr7 (76-129)||(48007078-48007131)
chr7 (87-143)||(3955042-3955098)
chr7 (68-120)||(5773196-5773248)
chr7 (154-194)||(7465463-7465503)
chr7 (154-198)||(17305448-17305492)
chr7 (95-147)||(27039545-27039596)
chr7 (165-197)||(41139080-41139112)
chr7 (68-116)||(44409269-44409317)
chr7 (154-198)||(45267984-45268028)
chr7 (108-156)||(46918974-46919022)
chr7 (154-198)||(48174960-48175004)
[»] chr5 (36 HSPs)
chr5 (68-132)||(37986845-37986909)
chr5 (71-197)||(38040260-38040379)
chr5 (84-193)||(39684236-39684339)
chr5 (77-139)||(31004117-31004179)
chr5 (77-155)||(40384281-40384359)
chr5 (71-197)||(9963409-9963528)
chr5 (71-155)||(21017586-21017671)
chr5 (71-123)||(3535917-3535969)
chr5 (68-155)||(14487591-14487676)
chr5 (95-155)||(24651166-24651226)
chr5 (69-198)||(11246473-11246596)
chr5 (71-149)||(22687862-22687940)
chr5 (72-197)||(31556812-31556931)
chr5 (68-197)||(34325259-34325382)
chr5 (77-122)||(20220154-20220199)
chr5 (68-116)||(36116858-36116905)
chr5 (68-123)||(28537197-28537252)
chr5 (69-155)||(19608643-19608728)
chr5 (163-197)||(22687936-22687970)
chr5 (68-142)||(27006383-27006457)
chr5 (165-199)||(37303925-37303959)
chr5 (83-129)||(42260713-42260759)
chr5 (71-155)||(843351-843433)
chr5 (72-156)||(2029112-2029194)
chr5 (71-155)||(6014809-6014891)
chr5 (164-197)||(9196152-9196185)
chr5 (71-123)||(10943778-10943828)
chr5 (78-198)||(30119951-30120065)
chr5 (86-123)||(33599971-33600008)
chr5 (165-197)||(4793962-4793994)
chr5 (101-153)||(5891084-5891136)
chr5 (71-115)||(17137848-17137892)
chr5 (100-156)||(30622298-30622354)
chr5 (158-194)||(31280441-31280477)
chr5 (71-123)||(34010597-34010649)
chr5 (154-194)||(36742025-36742065)
[»] scaffold0119 (1 HSPs)
scaffold0119 (68-197)||(1033-1156)
[»] chr8 (36 HSPs)
chr8 (72-197)||(14011020-14011139)
chr8 (69-194)||(7345425-7345544)
chr8 (75-196)||(28979021-28979136)
chr8 (84-135)||(42711210-42711261)
chr8 (97-197)||(10292345-10292440)
chr8 (88-198)||(16935575-16935684)
chr8 (70-144)||(39855135-39855209)
chr8 (93-155)||(40329208-40329270)
chr8 (84-121)||(36593258-36593295)
chr8 (69-122)||(44254291-44254344)
chr8 (76-128)||(22438570-22438622)
chr8 (69-198)||(25470825-25470948)
chr8 (68-124)||(39208847-39208903)
chr8 (95-198)||(39432333-39432430)
chr8 (72-147)||(43468689-43468762)
chr8 (68-123)||(220340-220395)
chr8 (68-123)||(689495-689550)
chr8 (68-123)||(733963-734018)
chr8 (68-123)||(857859-857914)
chr8 (74-145)||(18030695-18030765)
chr8 (100-158)||(23239151-23239209)
chr8 (87-128)||(13654824-13654865)
chr8 (87-128)||(13713466-13713507)
chr8 (71-123)||(14683938-14683988)
chr8 (71-155)||(24074536-24074618)
chr8 (77-114)||(27821892-27821929)
chr8 (154-199)||(29937202-29937247)
chr8 (165-197)||(2800012-2800044)
chr8 (76-116)||(3212916-3212956)
chr8 (76-152)||(6325303-6325378)
chr8 (68-116)||(6372582-6372630)
chr8 (78-114)||(22847250-22847286)
chr8 (84-120)||(26773696-26773732)
chr8 (165-197)||(37128730-37128762)
chr8 (84-132)||(37989035-37989083)
chr8 (169-197)||(41793045-41793073)
[»] chr6 (23 HSPs)
chr6 (68-197)||(26669637-26669760)
chr6 (68-116)||(30668162-30668210)
chr6 (68-155)||(6455483-6455570)
chr6 (83-143)||(7234007-7234067)
chr6 (165-198)||(3448344-3448377)
chr6 (154-199)||(6219346-6219391)
chr6 (84-129)||(29204863-29204908)
chr6 (84-214)||(3029944-3030068)
chr6 (154-198)||(34524868-34524912)
chr6 (70-129)||(3037569-3037628)
chr6 (71-129)||(16251506-16251562)
chr6 (68-123)||(34675784-34675839)
chr6 (97-197)||(6143958-6144052)
chr6 (68-122)||(17305580-17305633)
chr6 (154-196)||(19135924-19135966)
chr6 (165-198)||(2945588-2945621)
chr6 (165-198)||(9064858-9064891)
chr6 (77-129)||(22730688-22730741)
chr6 (68-155)||(9438332-9438417)
chr6 (165-197)||(14981772-14981804)
chr6 (68-111)||(16119352-16119396)
chr6 (72-116)||(24256985-24257029)
chr6 (84-116)||(32540945-32540977)
[»] scaffold0009 (1 HSPs)
scaffold0009 (83-156)||(62742-62815)
[»] scaffold0118 (1 HSPs)
scaffold0118 (72-122)||(37310-37360)
[»] scaffold0002 (1 HSPs)
scaffold0002 (71-116)||(440468-440513)
[»] scaffold0168 (1 HSPs)
scaffold0168 (154-198)||(34091-34135)
[»] scaffold0712 (1 HSPs)
scaffold0712 (154-200)||(4511-4557)
[»] scaffold0709 (1 HSPs)
scaffold0709 (154-200)||(4531-4577)
[»] scaffold0011 (1 HSPs)
scaffold0011 (69-147)||(19374-19452)
[»] scaffold0126 (1 HSPs)
scaffold0126 (89-122)||(22849-22882)
[»] scaffold0809 (1 HSPs)
scaffold0809 (165-197)||(4875-4907)
[»] scaffold0112 (1 HSPs)
scaffold0112 (165-197)||(18001-18033)
[»] scaffold0036 (1 HSPs)
scaffold0036 (165-197)||(25019-25051)


Alignment Details
Target: chr2 (Bit Score: 561; Significance: 0; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 692
Target Start/End: Complemental strand, 30737147 - 30736479
Alignment:
Q  18 acattattttcagaagtttacaaactcactttctannnnnnnnnnnnnnncaagtagcctagtgactagaattcacattttttaaggtgaataagtggga 117  Q
    |||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30737147 acattattttcagaagtttacaaactcactttcta-tttcatttttttttcaagtagcctagtgactagaattcacattttttaaggtgaataagtggga 30737049  T
Q  118 tgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagctatgctcacggggacatttctatttcatttttaac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30737048 tgtccgaagttcaaatcccaacccctacatgtaataataataattcatatccctgccaattgagctatgctcacggggacatttctatttcatttttaac 30736949  T
Q  218 atttcatgatacacaacgaaaatatattaaaagaaaaataataatgatgaacggtaaacaaaattctttgtggaaataatgtatcgaagaggtgatcgaa 317  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30736948 atttcatgatagacaacgaaaatatattaaaagaaaaataataatgatgaacggtaaacaaaattctttgtagaaataatgtatcgaagaggtgatcgaa 30736849  T
Q  318 aacacatttatataaaaattaaaattaccgtatgataannnnnnnnattaacacatctgatttaatatagttagataaaaatactataactttatggtgt 417  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30736848 aacacatttatataaaaattaaaattaccgtatgataattttttttattaacacatctgatttaatatagttagataaaaatactataactttatggtgt 30736749  T
Q  418 tacgagaaccaccaggtaactttgtctaatctatctatatcataacagtggtgctatatgatacgagagaaaaggccgatgaattgcacggtacactatt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||    
T  30736748 tacgagaaccaccaggtaactttgtctaatctatctatatcataacagtggtgctatat-----gagagaaaaggccgatgaattgcacggtacactatt 30736654  T
Q  518 ttctatcctatttttatggattctttcaaattaaaaaataattaaagtcaaaatattcagagagaacagccttgaacaaccttaattgtcttcatcctga 617  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30736653 ttctatcctattttcatggattctttcaaattaaaaaataattaaagtcaaaatattcagagagaacagccttgaacaaccttaattgtcttcatcctga 30736554  T
Q  618 agaccatccttgtcacgacgactcactatattcatcatcaccattgccaatgttgttgctttaattgtcttcatc 692  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30736553 agaccatccttgtcacgacaactcactatattcatcatcaccattgccaatgttgttgctttaattgtcttcatc 30736479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 203 - 355
Target Start/End: Complemental strand, 30868859 - 30868706
Alignment:
Q  203 tatttcatttttaacatttcatgatacacaacgaaaatatattaaaagaaaaataataatgatgaacggt-aaacaaaattctttgtggaaataatgtat 301  Q
    ||||||| ||||||||||| || ||| ||||| ||||||||||||||||||||||| || |||||| ||| ||| |||| | ||||  ||||||||| |     
T  30868859 tatttcacttttaacatttaataatagacaacaaaaatatattaaaagaaaaataaaaaagatgaatggtaaaaaaaaactatttgcagaaataatgcaa 30868760  T
Q  302 cgaagaggtgatcgaaaacacatttatataaaaattaaaattaccgtatgataa 355  Q
    | | ||||||||||| ||| |||||||||||||||| ||||||| ||| |||||    
T  30868759 caatgaggtgatcgataactcatttatataaaaatttaaattactgtaggataa 30868706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 34107391 - 34107268
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||||| |||| | ||||| || | |||||||| |||      ||||| || |||||    
T  34107391 caagtagtctagtggctagaattcacatttttcaaggtgaataagtggggtgtctggagttcgaacctcaacccctgcat------ataattatacatgt 34107298  T
Q  168 ccctgccaattgagctatgctcacggggac 197  Q
    ||||||||| ||||||||||||||||||||    
T  34107297 ccctgccaactgagctatgctcacggggac 34107268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 68 - 203
Target Start/End: Original strand, 39334859 - 39334988
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    ||||||| |||||| ||||||||||| ||||| || |||||||||||||||||| | ||||| || |||| |||||  ||      |||||||| |||||    
T  39334859 caagtagtctagtggctagaattcacctttttcaaagtgaataagtgggatgtctggagttcgaaccccagcccctgtat------ataataatgcatgt 39334952  T
Q  168 ccctgccaattgagctatgctcacggggacatttct 203  Q
    ||||||||| |||| |||||||||||| ||| ||||    
T  39334953 ccctgccaactgagttatgctcacgggaacaattct 39334988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 30811842 - 30811897
Alignment:
Q  100 taaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||    
T  30811842 taaggtgaataagtgggatgtccgaagttcgaatcccaacccttatatgtaataat 30811897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 22014646 - 22014759
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagct 183  Q
    |||||||||||||||| ||||| |||||||||| |||| |  |||| || | |||||||||||| |||| |||||||| |||||| ||| ||| ||| ||    
T  22014646 tagaattcacatttttcaaggtaaataagtggggtgtctggggttcgaacctcaacccctacatataat-ataataatgcatgtctctgtcaactgaact 22014744  T
Q  184 atgctcacggggaca 198  Q
    |||||||||| ||||    
T  22014745 atgctcacggagaca 22014759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 30681399 - 30681345
Alignment:
Q  210 tttttaacatttcatgatacacaacgaaaatatattaaaagaaaaataataatga 264  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  30681399 tttttaatatttcatgatagacaacgaaaatatattaaaagaaaaataatgatga 30681345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 35352382 - 35352435
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtc 121  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  35352382 caagtagtctagtgactagaattcacatttttcaaggtgaataagtggggtgtc 35352435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 32256253 - 32256178
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccct 143  Q
    |||||||||||||||||| ||||||  ||||| || |||||||||||||||||||| ||||| || ||| ||||||    
T  32256253 caagtagcctagtgactataattcaactttttcaatgtgaataagtgggatgtccggagttcgaaccccgacccct 32256178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 38581584 - 38581655
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaac 139  Q
    ||||||||||||||  |||||| ||| ||||||||| |||||||||||||||||||| |||| |||| ||||    
T  38581584 caagtagcctagtggttagaatacaccttttttaagatgaataagtgggatgtccgaggttcgaatctcaac 38581655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 18386792 - 18386877
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||||||||||| | ||||||||||  | || ||||||||||||||||| |||||| ||||| || |||| ||||||||| |||||||    
T  18386792 caagtagcctagcggctagaattca--tcttataaggtgaataagtggggtgtccggagttcgaaccccagcccctacatataataat 18386877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 45314518 - 45314466
Alignment:
Q  77 tagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||| |||||||    
T  45314518 tagtgagtagaattcacatttttcaagatgaataagtgggatgtctgaagttc 45314466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 44487761 - 44487800
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  44487761 tagaattcaccttttttaaggtgaataagtgggatgtccg 44487800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 20942087 - 20942133
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtg 114  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||||||    
T  20942087 caagtagtctagtgactagaattcacttttttcaaggtgaataagtg 20942133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 38242728 - 38242667
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    ||||||| || |||||||||||||||||||||||| |||||||| |||| | ||||| ||||    
T  38242728 caagtagtctggtgactagaattcacattttttaaagtgaataaatgggttatccgaggttc 38242667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 1244683 - 1244631
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||||| ||||||    
T  1244683 gtagtctagtggctagaattcacctttttcaaggtgaataagtggggtgtccg 1244631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 17896919 - 17896887
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtggg 116  Q
    |||||||||||||||||||||||||||||||||    
T  17896919 tagaattcacattttttaaggtgaataagtggg 17896887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 22355185 - 22355076
Alignment:
Q  83 ctagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagc 182  Q
    ||||||||||| ||||  |||||||||||||||| |||| | ||||| || | |||||||| ||       |||| ||| ||||||| |||||| |||||    
T  22355185 ctagaattcaccttttgcaaggtgaataagtggggtgtctggagttcgaaactcaacccctgcac------ataacaatgcatgtccttgccaactgagc 22355092  T
Q  183 tatgctcacggggaca 198  Q
    ||||||||||||||||    
T  22355091 tatgctcacggggaca 22355076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 29035091 - 29034967
Alignment:
Q  68 caagtagcctagtgactagaa-ttcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcat- 165  Q
    |||||||||||||| |||||| |||||   |||||| ||||||||||||| ||||||  |||| || |||  ||||| |||      |||||||| |||     
T  29035091 caagtagcctagtggctagaaattcac---ttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcat------ataataatgcatt 29035001  T
Q  166 gtccctgccaattgagctatgctcacggggacat 199  Q
    ||||||||||| ||||||||||||||||||||||    
T  29035000 gtccctgccaagtgagctatgctcacggggacat 29034967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 29664628 - 29664596
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||||||||||||||||||||||||    
T  29664628 tgtccctgccaattgagctatgctcacggggac 29664596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 30681313 - 30681269
Alignment:
Q  302 cgaagaggtgatcgaaaacacatttatataaaaattaaaattacc 346  Q
    ||||||||||||||| ||||||||||| |||||||||||| ||||    
T  30681313 cgaagaggtgatcgataacacatttatttaaaaattaaaaatacc 30681269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 2057580 - 2057541
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  2057580 tagaattcaccttttttaaggtgaataagtggggtgtccg 2057541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 11837101 - 11837021
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaata 153  Q
    ||||||||||| |||||||||||  ||| ||||||||||||||| | ||||||  |||| || ||| |||||||||| |||||    
T  11837101 gtagcctagtggctagaattcac--tttataaggtgaataagtgaggtgtccggggttcgaaccccgacccctacatataata 11837021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 18089839 - 18089800
Alignment:
Q  75 cctagtgactagaattcacattttttaaggtgaataagtg 114  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  18089839 cctagtgactagaattcacgtttttcaaggtgaataagtg 18089800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 37123291 - 37123216
Alignment:
Q  80 tgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||||||||||||  |||||||| |||||||||| || |||||| ||||| |||| | |||||| ||| |||||||    
T  37123291 tgactagaattcatcttttttaaagtgaataagtagggtgtccggagttcgaatctcgacccctgcatataataat 37123216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 37516098 - 37516019
Alignment:
Q  77 tagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataata 156  Q
    ||||| |||||||||| |||||||||||||||||| | |  ||| ||| |||| || |||||||||||||| ||| ||||    
T  37516098 tagtggctagaattcatattttttaaggtgaataaatagagtgttcgaggttcgaaccccaacccctacatataacaata 37516019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 8080728 - 8080766
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacg 192  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  8080728 ataataatgcatgtccctaccaattgagctatgctcacg 8080766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 118
Target Start/End: Original strand, 34644479 - 34644513
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggat 118  Q
    ||||||||||| |||||||||||||||||||||||    
T  34644479 tagaattcacaatttttaaggtgaataagtgggat 34644513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 5807761 - 5807798
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtc 121  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  5807761 tagaattcacctttttcaaggtgaataagtgggatgtc 5807798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 8234775 - 8234857
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||| ||||||||||| || |  |||||||||||||||| ||||||  |||| || |||  ||||||||| |||||||    
T  8234775 gtagcctagtggctagaattcaccttat--aaggtgaataagtggggtgtccggggttcgaaccccggcccctacatataataat 8234857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 12206612 - 12206571
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataag 112  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||    
T  12206612 gtagcctagtggctagaattcacctttttcaaggtgaataag 12206571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 25071247 - 25071210
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcac 191  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  25071247 ataataatgcatgtccctgccaattgagctatactcac 25071210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 34034376 - 34034343
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  34034376 tgtccctgccaactgagctatgctcacggggaca 34034343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 36426839 - 36426921
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||| ||||| ||||||||||| || |  ||| |||||||||||| ||| || ||||| || |||||||||||||| |||||||    
T  36426839 gtagcatagtggctagaattcaccttat--aagatgaataagtggggtgttcggagttcgaaccccaacccctacatataataat 36426921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 2971135 - 2971167
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtggg 116  Q
    |||||||||| ||||||||||||||||||||||    
T  2971135 tagaattcaccttttttaaggtgaataagtggg 2971167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 5772897 - 5772853
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggaca 198  Q
    |||| ||| ||||||| |||||| |||||||||||||||||||||    
T  5772897 ataacaatacatgtccttgccaactgagctatgctcacggggaca 5772853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 14307676 - 14307720
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||| ||||| ||||||||||| |||||||| |||||||||||||    
T  14307676 tagcttagtggctagaattcactttttttaaagtgaataagtggg 14307720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 23664086 - 23664038
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    ||||||| ||||||| |||||||||| ||||| ||||||||||| ||||    
T  23664086 caagtagtctagtgattagaattcacttttttcaaggtgaataaatggg 23664038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 23683807 - 23683726
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||| ||| ||||||||||  ||| |||| ||||||| |||| |||| || |||| || |||||||||||||| |||||||    
T  23683807 tagcctattgaatagaattcac--tttataagatgaataaatggggtgtctgaggttcgaaccccaacccctacatataataat 23683726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 23984265 - 23984301
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggacattt 201  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  23984265 tgtccctaccaattgagctaagctcacggggacattt 23984301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 32288466 - 32288406
Alignment:
Q  95 ttttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||| |||||||||||||||| ||||||| |||| || ||| | |||||||| |||||||    
T  32288466 tttttcaaggtgaataagtggggtgtccgaggttcgaaccccgatccctacatataataat 32288406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 32677443 - 32677375
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaac 139  Q
    |||| |||||||||| ||||||| ||||| || ||||||||||||| |||| ||| ||| | |||||||    
T  32677443 gtagtctagtgactataattcacctttttcaaagtgaataagtggggtgtctgaaattcgagtcccaac 32677375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 40160852 - 40160728
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||||  ||||||| |||| ||||  |||      |||| ||| |||||    
T  40160852 caagtagcctagtggctagaattcacctttttaaaggtgaataagtggggtgtccggggttcaaaccccagccccggcat------ataacaatgcatgt 40160759  T
Q  168 ccctgccaattgagctatgctcacggggaca 198  Q
    ||||||||||||||||||||||||| |||||    
T  40160758 ccctgccaattgagctatgctcacgaggaca 40160728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 50724479 - 50724397
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||| ||||||| |||| || |||||||||| ||| |||||||    
T  50724479 gtagcctagtggctagaattcac--tttttaaggtgaataagtggggtgtccgaggttcgaaccccaacccctgcatataataat 50724397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 50788369 - 50788451
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||| ||||||| |||| || |||||||||| ||| |||||||    
T  50788369 gtagcctagtggctagaattcac--tttttaaggtgaataagtggggtgtccgaggttcgaaccccaacccctgcatataataat 50788451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 23237467 - 23237365
Alignment:
Q  80 tgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattg 179  Q
    |||||||||||||| ||||| || ||||||| |||||||||||| ||||| ||  || ||||||||||      |||||||| |||||||||||||| ||    
T  23237467 tgactagaattcacctttttcaacgtgaatatgtgggatgtccggagttcgaactccgacccctacat------ataataatgcatgtccctgccaactg 23237374  T
Q  180 agctatgct 188  Q
    |||||||||    
T  23237373 agctatgct 23237365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 6951770 - 6951890
Alignment:
Q  69 aagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtc 168  Q
    |||||||||| || |||||||| |  |||||||||||||||||||| | ||||||| |||||||| || |||||| |||      |||||||| ||||||    
T  6951770 aagtagcctaatggctagaatttattttttttaaggtgaataagtgcggtgtccgaggttcaaat-ccgacccctgcat------ataataatgcatgtc 6951862  T
Q  169 cctgccaattgagctatgctcacgggga 196  Q
    |||| ||| |||| ||||||||||||||    
T  6951863 cctgtcaactgagttatgctcacgggga 6951890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 31680821 - 31680729
Alignment:
Q  96 tttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagctatgctcacggg 194  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| |||| |      |||| ||| ||||||||| | || |||||||||||||||||    
T  31680821 tttttaaggtgaataagtggggtgtccgaagttcaaaccccaacctctacgt------ataacaatgcatgtccctacaaactgagctatgctcacggg 31680729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 36331709 - 36331824
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattca-tgtcc 169  Q
    |||| |||||| |||||||||||  ||||||| ||||||||||||| ||||||  |||| || ||| |||||| |||      |||||||| || |||||    
T  36331709 gtagtctagtggctagaattcac--tttttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcat------ataataatgcattgtcc 36331800  T
Q  170 ctgccaattgagctatgctcacgg 193  Q
    ||||||||||||||||||||||||    
T  36331801 ctgccaattgagctatgctcacgg 36331824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 16985122 - 16985050
Alignment:
Q  83 ctagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||| |||||||| ||||||||||||  ||| ||| ||||||| || ||||||||||| |||||||    
T  16985122 ctagaattcactttttttaaagtgaataagtggagtgttcgaggttcaaacccaaacccctacatataataat 16985050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 16277961 - 16278016
Alignment:
Q  100 taaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||||||||||||||||||||||| ||||| |||||| |||||| ||| |||||||    
T  16277961 taaggtgaataagtgggatgtccggagttcgaatcccgacccctgcatataataat 16278016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 16874248 - 16874295
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggacattt 201  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  16874248 ataacaatgcatgtccctgccaactgagctatgctcacggggacattt 16874295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 24130676 - 24130552
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    ||||||| |||||| |||| |||||  ||||| |||||||||||||||| ||||||  ||||||| |||  ||||| |||      |||| |||  ||||    
T  24130676 caagtagtctagtggctagtattcaactttttcaaggtgaataagtggggtgtccggggttcaaaccccgtcccctgcat------ataacaatgtatgt 24130583  T
Q  168 ccctgccaattgagctatgctcacggggaca 198  Q
    ||||||||| |||| ||||||||||||||||    
T  24130582 ccctgccaactgagttatgctcacggggaca 24130552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 9685026 - 9684992
Alignment:
Q  164 atgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||||||||||||||||||||||||||    
T  9685026 atgtccctgccaattgagctatgctcacggggaca 9684992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 21142714 - 21142756
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagt 113  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  21142714 gtagcctagtgactagaattcaccttttttaaagtgaataagt 21142756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 33533304 - 33533267
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtc 121  Q
    |||||||||| |||||||||||||||||||||||||||    
T  33533304 tagaattcactttttttaaggtgaataagtgggatgtc 33533267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 55318115 - 55318046
Alignment:
Q  87 aattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataata 156  Q
    ||||||| ||||| || ||||||||||||| ||||||  |||| ||||||||||||||||| ||| ||||    
T  55318115 aattcacttttttcaaagtgaataagtggggtgtccggggttcgaatcccaacccctacatttaacaata 55318046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 26583203 - 26583094
Alignment:
Q  84 tagaattcac-attttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagc 182  Q
    |||||||||| |||||||||| ||||||| || | |||||| ||||| || ||| |||||| |||      |||||||| |||||||||| ||||||||     
T  26583203 tagaattcactattttttaagatgaataattgaggtgtccgtagttcgaaccccgacccctgcat------ataataatgcatgtccctgtcaattgagt 26583110  T
Q  183 tatgctcacggggaca 198  Q
    |||| |||||||||||    
T  26583109 tatgatcacggggaca 26583094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 38507685 - 38507645
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggg 194  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  38507685 ataataatgcatgtccctgccaactgagctatgctcacggg 38507645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 38507751 - 38507715
Alignment:
Q  80 tgactagaattcacattttttaaggtgaataagtggg 116  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38507751 tgactagaattcagattttttaaggtgaataagtggg 38507715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 42665904 - 42665964
Alignment:
Q  69 aagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    |||||| ||||||| |||||||||  ||||| |||||||||||||||| |||||| |||||    
T  42665904 aagtagtctagtgattagaattcatttttttcaaggtgaataagtggggtgtccggagttc 42665964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 12236636 - 12236593
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||    
T  12236636 ataataatgcatgtccctgccaactgagctacgctcacggggac 12236593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 31902211 - 31902262
Alignment:
Q  96 tttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacat 147  Q
    ||||||||||||||||||||| |||||| ||||| || ||| ||||||||||    
T  31902211 tttttaaggtgaataagtggggtgtccggagttcgaaccccgacccctacat 31902262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 31917873 - 31917924
Alignment:
Q  96 tttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacat 147  Q
    ||||||||||||||||||||| |||||||||||| || ||| ||| ||||||    
T  31917873 tttttaaggtgaataagtggggtgtccgaagttcgaagcccgacctctacat 31917924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 43911723 - 43911676
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgg 115  Q
    |||||||||||||| | | ||||||||||||| |||||||||||||||    
T  43911723 caagtagcctagtggcaataattcacatttttcaaggtgaataagtgg 43911676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 10959158 - 10959124
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggacat 199  Q
    |||||||||||| ||||||||||||||||||||||    
T  10959158 tgtccctgccaactgagctatgctcacggggacat 10959124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 32080157 - 32080046
Alignment:
Q  83 ctagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagc 182  Q
    ||||||||||| ||||| |||||||||||||||| ||| ||  |||| || ||| |||| |||||      ||||||||||||| |||||| || |||||    
T  32080157 ctagaattcacctttttcaaggtgaataagtggggtgttcggggttcgaaccccgacccatacat------ataataattcatgcccctgcaaactgagc 32080064  T
Q  183 tatgctcacggggacatt 200  Q
    |||| |||| ||| ||||    
T  32080063 tatgttcactggggcatt 32080046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 4045628 - 4045673
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    |||||||||| ||||| ||| |||||||||||| ||||||||||||    
T  4045628 tagaattcacctttttcaagatgaataagtggggtgtccgaagttc 4045673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 9625008 - 9624975
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  9625008 tgtccctgccaactgagctatgctcacggggaca 9624975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 21248971 - 21249016
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||| |||||| ||||||||||| ||||| ||||||||||||||||    
T  21248971 gtagtctagtggctagaattcacctttttcaaggtgaataagtggg 21249016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 27183751 - 27183784
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  27183751 tgtccctgccaactgagctatgctcacggggaca 27183784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 31435516 - 31435557
Alignment:
Q  105 tgaataagtgggatgtccgaagttcaaatcccaacccctaca 146  Q
    |||||||||||||||||||| |||| || |||||||||||||    
T  31435516 tgaataagtgggatgtccgaggttcgaaccccaacccctaca 31435557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 33206869 - 33206787
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||| ||||||||||| || |  |||||||||||||||| ||||||  |||| || |||| ||||| ||| |||||||    
T  33206869 gtagcctagtggctagaattcaccttat--aaggtgaataagtggggtgtccggggttcgaaccccagcccctgcatataataat 33206787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 43566779 - 43566861
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||| ||||||||||| || |  |||||||||||||||| |||| || |||| || ||| |||||| ||| |||||||    
T  43566779 gtagcctagtggctagaattcaccttat--aaggtgaataagtggggtgtctgaggttcgaaccccgacccctgcatataataat 43566861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 46845011 - 46845044
Alignment:
Q  164 atgtccctgccaattgagctatgctcacggggac 197  Q
    ||||||||||||||||||||| ||||||||||||    
T  46845011 atgtccctgccaattgagctaagctcacggggac 46845044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 47191485 - 47191366
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcat-gtcc 169  Q
    ||||||||||| ||||||||||  | || ||||||||||||||||| ||| ||  |||| ||  ||| ||||| |||      |||||||| ||| ||||    
T  47191485 gtagcctagtggctagaattca--tcttataaggtgaataagtggggtgttcggggttcgaactccagcccctgcat------ataataatgcattgtcc 47191394  T
Q  170 ctgccaattgagctatgctcacggggac 197  Q
    ||||||| ||||||||||||||||||||    
T  47191393 ctgccaactgagctatgctcacggggac 47191366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 55494715 - 55494682
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    ||||||| ||||||||||||||||||||||||||    
T  55494715 tgtccctaccaattgagctatgctcacggggaca 55494682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 4478349 - 4478401
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||| |||||| ||| |||| |||||||| ||| |||||||||||||||||||    
T  4478349 gtagtctagtggctaaaatttacatttttaaagatgaataagtgggatgtccg 4478401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 9167281 - 9167337
Alignment:
Q  100 taaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataata 156  Q
    |||||||||||| |||| |||||||||||| || ||| |||||| ||| ||||||||    
T  9167281 taaggtgaataactggggtgtccgaagttcgaaccccgacccctgcatataataata 9167337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 14868710 - 14868678
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||| ||||||||||||||||||||    
T  14868710 tgtccctgccaactgagctatgctcacggggac 14868678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 28951967 - 28951935
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtggg 116  Q
    |||||||||||||||| ||||||||||||||||    
T  28951967 tagaattcacatttttcaaggtgaataagtggg 28951935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 46416281 - 46416321
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggg 194  Q
    |||||||| ||||||| |||||| |||||||||||||||||    
T  46416281 ataataatgcatgtccttgccaactgagctatgctcacggg 46416321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 68 - 191
Target Start/End: Complemental strand, 43020728 - 43020611
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    |||||||| ||||| ||||||||||||||||| ||||||||| |||||| ||||||| |||| || |||||||||| |||      |||||||| |||||    
T  43020728 caagtagcgtagtggctagaattcacatttttcaaggtgaatgagtggggtgtccgaggttcgaaccccaacccctgcat------ataataatgcatgt 43020635  T
Q  168 ccctgccaattgagctatgctcac 191  Q
    |||||||||  |||||||||||||    
T  43020634 ccctgccaaccgagctatgctcac 43020611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 9768790 - 9768911
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccc 170  Q
    ||||||||||  ||||||||||| ||||| |||||||||||||||| ||||||  |||| || ||| |||||| |||      |||| ||| ||||||||    
T  9768790 gtagcctagtagctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcat------ataacaatgcatgtccc 9768883  T
Q  171 tgccaattgagctatgctcacggggaca 198  Q
    |||||| |||||||||||||||||||||    
T  9768884 tgccaactgagctatgctcacggggaca 9768911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 9769561 - 9769674
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccc 170  Q
    ||||| |||||  |||||||||| ||||| |||||||||||||||| ||||||  |||| || ||||| ||||||||      |||||||| ||||||||    
T  9769561 gtagcttagtggttagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccaatccctacat------ataataatgcatgtccc 9769654  T
Q  171 tgccaattgagctatgctca 190  Q
    |||||| |||||||||||||    
T  9769655 tgccaactgagctatgctca 9769674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 41677174 - 41677054
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccc 170  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||| |||||| ||||| || ||| |||||  |||      ||||||||  ||||| |    
T  41677174 gtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtccggagttcgaaccccgacccccgcat------ataataatgaatgtctc 41677081  T
Q  171 tgccaattgagctatgctcacggggac 197  Q
    |||||| ||||||| ||||||||||||    
T  41677080 tgccaactgagctacgctcacggggac 41677054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 48260167 - 48260290
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    |||| |||||| || ||||||||||||||||| |||||||||||||||| ||||||  |||| ||  || ||||| ||||      |||||||| ||  |    
T  48260167 caaggagcctaatggctagaattcacatttttcaaggtgaataagtggggtgtccggggttcgaactccgaccccgacat------ataataatgcacat 48260260  T
Q  168 ccctgccaattgagctatgctcacggggac 197  Q
    ||||||||| ||||||||||||||||||||    
T  48260261 ccctgccaactgagctatgctcacggggac 48260290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 7906304 - 7906429
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||| ||| |||||   |||| || |||| ||||| |||      |||| ||| |||||    
T  7906304 caagtaccctagtggctagaattcacattttttaaggtcaataagcggggtgtcccgggttcgaaccccagcccctgcat------ataacaatgcatgt 7906397  T
Q  168 ccctgccaattgagctatgctcacggggacat 199  Q
    |||| |||| ||| ||||||||||||||||||    
T  7906398 ccctaccaactgaactatgctcacggggacat 7906429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 2643796 - 2643916
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccc 170  Q
    |||| ||||||  |||| |||||||||||||||||||||||||||| |||| |  ||||||| ||| |||| | |||      |||||||| |||||| |    
T  2643796 gtagtctagtggttagagttcacattttttaaggtgaataagtggggtgtctggggttcaaaccccgacccatgcat------ataataatgcatgtctc 2643889  T
Q  171 tgccaattgagctatgctcacggggac 197  Q
    |||||| | ||||||||||||||||||    
T  2643890 tgccaactaagctatgctcacggggac 2643916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 23973460 - 23973547
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||| |||||| ||||||||||||||||| || ||||||||||||| ||| ||  |||| ||||||||||| | ||| |||||||    
T  23973460 caagtagtctagtggctagaattcacatttttcaacgtgaataagtggggtgtacggggttcgaatcccaacccttgcatataataat 23973547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 197
Target Start/End: Original strand, 4511519 - 4511626
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagct 183  Q
    |||||||||| ||||||||||||||||||||||| |||||   ||||||  || |||||| |||      |||||||| ||||||| ||||||||||| |    
T  4511519 tagaattcaccttttttaaggtgaataagtgggacgtccgggattcaaacaccgacccctgcat------ataataatgcatgtccttgccaattgagtt 4511612  T
Q  184 atgctcacggggac 197  Q
    ||| ||||||||||    
T  4511613 atgttcacggggac 4511626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 3046155 - 3046211
Alignment:
Q  76 ctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaa 132  Q
    ||||||||||||||| || |||||||||||||||||||||| |||| || |||||||    
T  3046155 ctagtgactagaatttaccttttttaaggtgaataagtggggtgtcagaggttcaaa 3046211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 3261959 - 3261907
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatccc 136  Q
    |||||||||||||||| ||||||||||||||| ||||| || |||||||||||    
T  3261959 tagaattcacatttttcaaggtgaataagtggaatgtctgaggttcaaatccc 3261907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 19866592 - 19866532
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagtt 128  Q
    |||||||  ||||| ||||||||||| |||||||||||||||||||||| |||||| ||||    
T  19866592 caagtagtttagtggctagaattcaccttttttaaggtgaataagtggggtgtccggagtt 19866532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 3341719 - 3341827
Alignment:
Q  73 agcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctg 172  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||| ||||||  |||| |  |||  ||||| |||      |||||||| ||||||||||    
T  3341719 agcctagtggctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgatccccggcccctgcat------ataataatgcatgtccctg 3341812  T
Q  173 ccaattgagctatgc 187  Q
    |||| ||||||||||    
T  3341813 ccaactgagctatgc 3341827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 9976365 - 9976423
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    ||||| ||||| ||||||||||| ||||| |||||||||||||||| |||||| |||||    
T  9976365 gtagcgtagtggctagaattcacttttttcaaggtgaataagtggggtgtccggagttc 9976423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 4354088 - 4354170
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||| ||| |||||||||||  ||| ||||||||||||||||| |||||||||||| || |||  ||||| ||| |||||||    
T  4354088 gtagcctggtggctagaattcac--tttataaggtgaataagtggggtgtccgaagttcgaaccccggcccctgcatataataat 4354170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 9163396 - 9163336
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaa 132  Q
    |||| |||||| ||||||||||||| ||||||| |||||||||| ||||||||| |||||||    
T  9163396 gtagtctagtggctagaattcacat-ttttaagatgaataagtgtgatgtccgaggttcaaa 9163336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 38028654 - 38028601
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtc 121  Q
    |||||||||||||   |||||||||||||||| |||||||||||||||| ||||    
T  38028654 caagtagcctagtagttagaattcacatttttcaaggtgaataagtggggtgtc 38028601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 1721257 - 1721132
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    |||||||||||  | ||||||||||| |||||||||||||||||||| | ||||||  |||| || |||  ||||| |||      |||| ||| |||||    
T  1721257 caagtagcctaacggctagaattcaccttttttaaggtgaataagtgaggtgtccggggttcgaaacccggcccctgcat------ataacaatgcatgt 1721164  T
Q  168 ccctgccaattgagctatgctcacggggacat 199  Q
     ||| |||| |||||||||||||| |||||||    
T  1721163 tcctaccaactgagctatgctcacagggacat 1721132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 2085821 - 2085881
Alignment:
Q  95 ttttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||||||||| |||| |||||||| ||||| |||| |||| |||||||||||| |||||||    
T  2085821 ttttttaaggcgaatgagtgggatatccgaggttcgaatctcaacccctacatataataat 2085881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 12553308 - 12553256
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    ||||||||||| ||||||||||| ||||| || ||||||||||||| ||||||    
T  12553308 gtagcctagtggctagaattcacctttttcaaagtgaataagtggggtgtccg 12553256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 18003853 - 18003809
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggaca 198  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||    
T  18003853 ataacaatgcatgtccctgccaactgagctatgctcacggggaca 18003809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 50199457 - 50199509
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    ||||||||||| |||||||| || ||||| |||||||||||||||| ||||||    
T  50199457 gtagcctagtggctagaattgacctttttcaaggtgaataagtggggtgtccg 50199509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 26349966 - 26350005
Alignment:
Q  77 tagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  26349966 tagtgactaaaattcatattttttaaggtgaataagtggg 26350005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 29491557 - 29491462
Alignment:
Q  98 tttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcat-gtccctgccaattgagctatgctcacgggga 196  Q
    ||||| ||||||||||||| ||||||  |||| || ||| |||||| |||      |||||||| ||| ||||||||||| |||||||||||||||||||    
T  29491557 tttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcat------ataataatgcattgtccctgccaactgagctatgctcacgggga 29491464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 195161 - 195108
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtc 121  Q
    |||||||| |||||  |||||||||| ||||| |||||||||||||||| ||||    
T  195161 caagtagcttagtggttagaattcacctttttcaaggtgaataagtggggtgtc 195108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 13941420 - 13941375
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    |||||||||| ||||| ||| |||||||||||| ||||||||||||    
T  13941420 tagaattcacttttttcaagatgaataagtggggtgtccgaagttc 13941375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 15774295 - 15774377
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||| ||||| ||||||||||| || |  |||||||||||||||| ||||||  |||| || ||| |||||||||| |||||||    
T  15774295 gtagcttagtggctagaattcaccttat--aaggtgaataagtggggtgtccggggttcgaaccccgacccctacatataataat 15774377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 19976622 - 19976655
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  19976622 tgtccctgccaactgagctatgctcacggggaca 19976655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 25819210 - 25819177
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  25819210 tgtccctgccaactgagctatgctcacggggaca 25819177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 39238741 - 39238708
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  39238741 tgtccctgccaactgagctatgctcacggggaca 39238708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 40678848 - 40678815
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  40678848 tgtccctgccaactgagctatgctcacggggaca 40678815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 40679886 - 40679841
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    |||||||| | |||||||||| ||||||||||| ||||||||||||    
T  40679886 tagaattctccttttttaaggagaataagtggggtgtccgaagttc 40679841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 48565125 - 48565186
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    |||||||| ||||| ||||||||||| ||||| || || |||||||||| ||||||| ||||    
T  48565125 caagtagcttagtgtctagaattcacctttttcaaagtaaataagtggggtgtccgaggttc 48565186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 49503190 - 49503223
Alignment:
Q  164 atgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||||||||||||||||||| |||||    
T  49503190 atgtccctgccaattgagctatgctcacagggac 49503223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 49632401 - 49632356
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    ||||| ||||| ||||||||||| ||||| ||||||||||||||||    
T  49632401 gtagcttagtgcctagaattcacctttttaaaggtgaataagtggg 49632356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 50755459 - 50755413
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||||||||||||| |||||||||||  ||| |||||||||||||||||    
T  50755459 caagtagcctagtggctagaattcac--tttataaggtgaataagtggg 50755413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 2052752 - 2052784
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||| ||||||||||||||||||||    
T  2052752 tgtccctgccaactgagctatgctcacggggac 2052784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 2903005 - 2903053
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||||| ||||||| ||||||||| | ||||| ||||||||||||||||    
T  2903005 caagtaacctagtggctagaattctcctttttcaaggtgaataagtggg 2903053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 9527451 - 9527419
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||| ||||||||||||||||||||    
T  9527451 tgtccctgccaactgagctatgctcacggggac 9527419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 18179365 - 18179321
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggaca 198  Q
    |||| ||| |||||||||||||| |||| ||||||||||||||||    
T  18179365 ataacaatgcatgtccctgccaactgagttatgctcacggggaca 18179321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 39994832 - 39994881
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||||||||| ||||||||||| || |  |||||||||||||||||||||||    
T  39994832 tagcctagtggctagaattcaccttat--aaggtgaataagtgggatgtccg 39994881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 39995619 - 39995651
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||| ||||||||||||||||||||    
T  39995619 tgtccctgccaactgagctatgctcacggggac 39995651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 42832058 - 42832009
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    ||||||||||||||||||||||   || ||||||||||||||||| ||||||    
T  42832058 tagcctagtgactagaattcac--cttataaggtgaataagtggggtgtccg 42832009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 50859347 - 50859400
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||||||||||||| |||||||||||   |||||||||||||| ||||| ||||||    
T  50859347 caagtagcctagtggctagaattcac--cttttaaggtgaatatgtggggtgtccg 50859400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 54854157 - 54854281
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    ||||||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||  |||| || |||| ||||| |||      ||||| || |||||    
T  54854157 caagtagtctagtggctagaattcacttttttcaaggtgaataagtgtgatgtccggggttcgaaccccagcccctgcat------ataattatgcatgt 54854250  T
Q  168 ccctgccaattgagctatgctcacggggaca 198  Q
    ||||||||| |||||||||||||||||||||    
T  54854251 ccctgccaactgagctatgctcacggggaca 54854281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 69 - 198
Target Start/End: Original strand, 49039424 - 49039547
Alignment:
Q  69 aagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtc 168  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||||  |||| || ||||  |||| |||      |||| ||| ||||||    
T  49039424 aagtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccagtccctgcat------ataacaatgcatgtc 49039517  T
Q  169 cctgccaattgagctatgctcacggggaca 198  Q
    |||||||| |||||||||||||||||||||    
T  49039518 cctgccaactgagctatgctcacggggaca 49039547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 20610853 - 20610739
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccc 170  Q
    |||| |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| || |||  ||||| |||      |||| ||| ||||||||    
T  20610853 gtagtctagtggctagaattcaccttttttaaggtgaataagtgggatgtccggagttcgaaccccggcccctgcat------ataacaatgcatgtccc 20610760  T
Q  171 tgccaattgagctatgctcac 191  Q
    |||||| ||||||||||||||    
T  20610759 tgccaactgagctatgctcac 20610739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 41492477 - 41492603
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    |||||| ||||||| ||||||||||| ||||| ||||| |||||||||| ||||| | |||| || |||  ||||| |||      |||||||| |||||    
T  41492477 caagtaacctagtggctagaattcacctttttcaaggtaaataagtggggtgtcc-aggttcgaaccccggcccctgcat------ataataatgcatgt 41492569  T
Q  168 ccctgccaattgagctatgctcacggggacattt 201  Q
    ||||||||| ||||||||||||||||||||||||    
T  41492570 ccctgccaactgagctatgctcacggggacattt 41492603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 16201381 - 16201326
Alignment:
Q  100 taaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||||||||||| | ||||||||| |||||||| ||||||||||||||||||||||    
T  16201381 taaggtgaataaataggatgtccggagttcaaaccccaacccctacatgtaataat 16201326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 32048544 - 32048624
Alignment:
Q  74 gcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||||||||||||||||||| |||||||| |||||||| |||| |||| |  ||||||| ||| |||||||||| |||||||    
T  32048544 gcctagtgactagaattcac-ttttttaaagtgaataaatgggctgtctggggttcaaaccccgacccctacatataataat 32048624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 33359933 - 33359880
Alignment:
Q  69 aagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtcc 122  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||    
T  33359933 aagtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtcc 33359880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 18497506 - 18497434
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccct 143  Q
    |||| ||| |||||||||||  | |||||||||| |||||||||||||||||| ||||| || ||||||||||    
T  18497506 gtagtctattgactagaattttctttttttaaggagaataagtgggatgtccggagttcgaaccccaacccct 18497434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 27922006 - 27921893
Alignment:
Q  75 cctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgcc 174  Q
    |||||||  |||||||||||||||||||| |||||||||| |||||| |  |||| || |||  ||||| |||      |||||||| ||||||||| ||    
T  27922006 cctagtggttagaattcacattttttaagatgaataagtgagatgtctggggttcgaaccccggcccctgcat------ataataatgcatgtccctacc 27921913  T
Q  175 aattgagctatgctcacggg 194  Q
    || |||||||||||||||||    
T  27921912 aactgagctatgctcacggg 27921893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 23226683 - 23226738
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||||||  ||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  23226683 caagtagtatagtggctataattcacattttttaaggtgaataagtgagatgtccg 23226738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 49319507 - 49319387
Alignment:
Q  72 tagcctagtgactagaattcacatttttt-aaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccc 170  Q
    |||||||||| ||| ||||||| |||||| |||||||||||||||| ||||||  |||  || ||| |||||| |||      |||||||| |||||||     
T  49319507 tagcctagtggctataattcaccttttttcaaggtgaataagtggggtgtccggggttggaaccccgacccctgcat------ataataatgcatgtcca 49319414  T
Q  171 tgccaattgagctatgctcacggggac 197  Q
    |||||| ||||||||||||||| ||||    
T  49319413 tgccaactgagctatgctcacgaggac 49319387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 21476061 - 21476120
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    |||||||||||||| |||||||||||  ||| |||| ||||||||||||||||||| |||||    
T  21476061 caagtagcctagtggctagaattcac--tttataagatgaataagtgggatgtccggagttc 21476120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 29785244 - 29785142
Alignment:
Q  91 cacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagctatgctca 190  Q
    ||||||||| |||||||||||||||| ||||||  |||| || |||| |||||||||      || | | |  ||||||||||||| |||||||||||||    
T  29785244 cacatttttcaaggtgaataagtggggtgtccggggttcgaaccccagcccctacat------attacagtgtatgtccctgccaactgagctatgctca 29785151  T
Q  191 cggggacat 199  Q
    |||||||||    
T  29785150 cggggacat 29785142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 36257807 - 36257688
Alignment:
Q  70 agtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtcc 169  Q
    |||||||||||| |||||||||||  ||||||| ||||||||||||| ||||||  |||| || |||  ||||| |||      | |||| | | |||||    
T  36257807 agtagcctagtggctagaattcac--tttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcat------acaatactgcttgtcc 36257716  T
Q  170 ctgccaattgagctatgctcacggggac 197  Q
    ||||||| ||||||||||||||||||||    
T  36257715 ctgccaactgagctatgctcacggggac 36257688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 30616111 - 30616062
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||| ||||||    
T  30616111 tagcctagtgactagaattcac--tttttaaagtgaataagtggggtgtccg 30616062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 47416582 - 47416498
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||| |||||  |||||||||| ||||| || ||||||||||||| |||||||  ||| || |||||||||| ||| |||||||    
T  47416582 gtagcttagtggttagaattcacctttttcaaagtgaataagtggggtgtccgagattcgaaccccaacccctgcatataataat 47416498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 6202720 - 6202665
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||||||| ||||||||||||||||| ||||| ||| ||||||||| || ||||||    
T  6202720 caagtagcttagtgactagaattcacctttttcaagatgaataagtagggtgtccg 6202665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 6481571 - 6481610
Alignment:
Q  77 tagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  6481571 tagtgactagaattcaccatttttaaggtgaataagtggg 6481610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 36045930 - 36045822
Alignment:
Q  85 agaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagcta 184  Q
    ||||||||| ||||| ||  ||| |||||| | |||||| ||||| |||| |||||||| |||      |||| ||| |||||||||| |||||||||||    
T  36045930 agaattcacctttttcaatatgactaagtgaggtgtccggagttcgaatctcaacccctgcat------ataacaatgcatgtccctgtcaattgagcta 36045837  T
Q  185 tgctcacggggacat 199  Q
    ||||||| |||||||    
T  36045836 tgctcactgggacat 36045822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 39293646 - 39293592
Alignment:
Q  68 caagtagcctagtgactagaattcacatttttt-aaggtgaataagtgggatgtc 121  Q
    ||||||| |||||  ||||||||||| |||||| |||||||||||||||||||||    
T  39293646 caagtagtctagtagctagaattcaccttttttcaaggtgaataagtgggatgtc 39293592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 39449500 - 39449470
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtg 114  Q
    |||||||||||||||||||||||||||||||    
T  39449500 tagaattcacattttttaaggtgaataagtg 39449470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 30696754 - 30696721
Alignment:
Q  164 atgtccctgccaattgagctatgctcacggggac 197  Q
    ||||||||||||| ||||||||||||||||||||    
T  30696754 atgtccctgccaactgagctatgctcacggggac 30696721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 42411433 - 42411556
Alignment:
Q  68 caagtagcctagtgactagaa-ttcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcat- 165  Q
    |||||||||||||| |||||| |||||  ||||||| || |||||||||| ||||||  |||| || ||| |||||| |||      ||||| || |||     
T  42411433 caagtagcctagtggctagaaattcac--tttttaaagtaaataagtggggtgtccggggttcgaaccccgacccctgcat------ataattatgcatt 42411524  T
Q  166 gtccctgccaattgagctatgctcacggggac 197  Q
    ||||||||||| ||||||||||||||||||||    
T  42411525 gtccctgccaactgagctatgctcacggggac 42411556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 193
Target Start/End: Original strand, 43323784 - 43323813
Alignment:
Q  164 atgtccctgccaattgagctatgctcacgg 193  Q
    ||||||||||||||||||||||||||||||    
T  43323784 atgtccctgccaattgagctatgctcacgg 43323813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 48512224 - 48512191
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  48512224 tgtccctgccaactgagctatgctcacggggaca 48512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 53815721 - 53815688
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  53815721 tgtccctgccaactgagctatgctcacggggaca 53815688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 8998356 - 8998411
Alignment:
Q  69 aagtagcctagtgactagaattcacatttt-ttaaggtgaataagtgggatgtccga 124  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||| || |||||||    
T  8998356 aagtagcctagtgt-tagaattcacatttttttaaggtgaataagttgggtgtccga 8998411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 28520801 - 28520833
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||| ||||||||||||||||||||    
T  28520801 tgtccctgccaactgagctatgctcacggggac 28520833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 35112807 - 35112738
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||  ||| |||||| |||||| ||||||||||| |||| || ||| |||||||||| |||||||    
T  35112807 tagaattcac--tttataaggtaaataagcgggatgtccgatgttcgaaccccgacccctacatataataat 35112738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 36008300 - 36008268
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||| ||||||||||||||||||||    
T  36008300 tgtccctgccaactgagctatgctcacggggac 36008268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 38657577 - 38657533
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggaca 198  Q
    |||| ||| |||||||||||||| ||||| |||||||||||||||    
T  38657577 ataacaatgcatgtccctgccaactgagccatgctcacggggaca 38657533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 40261221 - 40261181
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggg 194  Q
    |||||||| ||||||||||| || |||||||||||||||||    
T  40261221 ataataatgcatgtccctgctaactgagctatgctcacggg 40261181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 44975993 - 44975937
Alignment:
Q  100 taaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataata 156  Q
    |||||||||||||||||||||||||  ||| || |||||||||| |||  |||||||    
T  44975993 taaggtgaataagtgggatgtccgagattcgaaccccaacccctgcatacaataata 44975937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 7392284 - 7392411
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    |||||||  ||||| ||| |||||| |||||| |||||||||||||||| ||| ||  ||||||| ||||||| || |||      |||| ||| |||||    
T  7392284 caagtagtttagtggctataattcatatttttcaaggtgaataagtggggtgttcggggttcaaaccccaacctctgcat------ataacaatgcatgt 7392377  T
Q  168 ccctgccaattgagctatgctcacggggacattt 201  Q
     |||||||||||||||||||||||||||||||||    
T  7392378 tcctgccaattgagctatgctcacggggacattt 7392411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 35498505 - 35498395
Alignment:
Q  77 tagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaa 176  Q
    ||||| ||||||||||| ||||| || ||||||||||||| |||||||||||  || |||||||||| |||      |||||||| ||||||||||||||    
T  35498505 tagtggctagaattcacctttttcaaagtgaataagtggggtgtccgaagtttgaa-cccaacccctgcat------ataataatgcatgtccctgccaa 35498413  T
Q  177 ttgagctatgctcacggg 194  Q
     |||| |||||| |||||    
T  35498412 ctgagttatgcttacggg 35498395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 10958148 - 10958095
Alignment:
Q  70 agtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||    
T  10958148 agtagcctagtggctagaattcaccttttttgaggtgaataagtggggtgtccg 10958095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 32309126 - 32309179
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtc 121  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| |||| ||||    
T  32309126 caagtagtctagtggctagaattcacattttttaaggtgaataactggggtgtc 32309179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 41000861 - 41000825
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgt 120  Q
    |||||||||||||||||||||||||||||||||||||    
T  41000861 tagaattcacattttttaaggtgaataagtgggatgt 41000825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 200
Target Start/End: Original strand, 29658252 - 29658377
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcat-g 166  Q
    |||||||||||||| ||||||||||| || |  |||||||||||||||| ||||||  |||| || |||  ||||| |||      |||| ||| ||| |    
T  29658252 caagtagcctagtggctagaattcaccttat--aaggtgaataagtggggtgtccggggttcgaaccccggcccctgcat------ataacaatgcattg 29658343  T
Q  167 tccctgccaattgagctatgctcacggggacatt 200  Q
    || |||||||||||||||||||||||||||||||    
T  29658344 tcgctgccaattgagctatgctcacggggacatt 29658377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 35195951 - 35195836
Alignment:
Q  77 tagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaa 176  Q
    |||||||||||| |||| ||||| ||||||||||| |||| ||| ||  |||| || |||  ||||| |||      |||||||| ||||||||||||||    
T  35195951 tagtgactagaagtcacctttttcaaggtgaataaatggggtgttcggggttcgaaccccggcccctgcat------ataataatgcatgtccctgccaa 35195858  T
Q  177 ttgagctatgctcacggggaca 198  Q
     ||||||||||| |||||||||    
T  35195857 ctgagctatgcttacggggaca 35195836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 21925586 - 21925528
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaa 132  Q
    |||||||||| ||||||||||  | || ||||||||||||||||||| |||||||||||||    
T  21925586 tagcctagtggctagaattca--tcttataaggtgaataagtgggatatccgaagttcaaa 21925528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 26734253 - 26734302
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtc 121  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||| ||||    
T  26734253 tagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtc 26734302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 32994485 - 32994448
Alignment:
Q  95 ttttttaaggtgaataagtgggatgtccgaagttcaaa 132  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  32994485 ttttttaaggtgaataagtgggatgtccggagttcaaa 32994448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 10958076 - 10958036
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggg 194  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  10958076 ataatagtgcatgtccctgccaattgagctatgctcacggg 10958036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 8147244 - 8147283
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacgg 193  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  8147244 ataacaatgcatgtccctgccaattgagctatgctcacgg 8147283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 16916574 - 16916495
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacat 147  Q
    |||||||| ||||| ||| |||| |  ||||||||| |||||||||| | |||||||||||| || ||| ||||||||||    
T  16916574 caagtagcttagtggctaaaatttatcttttttaagctgaataagtgaggtgtccgaagttcgaaccccgacccctacat 16916495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 25711114 - 25711196
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||  |||||||||||||| | ||| |||||||||||| ||||||| |||| || |||  ||||||||| |||||||    
T  25711114 tagcctagtggatagaattcacatttataaag-tgaataagtggggtgtccgaggttcgaaccccggcccctacatataataat 25711196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 27726427 - 27726470
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||    
T  27726427 ataataatgcatgtccctgccaactgagctatgttcacggggac 27726470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 1649265 - 1649215
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtcc 122  Q
    |||||||||| |||||||||||  |||| |||||||||||||||| |||||    
T  1649265 tagcctagtggctagaattcaccattttcaaggtgaataagtggggtgtcc 1649215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 4169184 - 4169069
Alignment:
Q  75 cctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgcc 174  Q
    ||||||| |||||||||||  ||| ||||||||||||||||| ||||||  ||||||| |||  ||| | ||| ||| ||||   |||   |||||||||    
T  4169184 cctagtggctagaattcac--tttataaggtgaataagtggggtgtccggggttcaaaccccggcccttgcatataacaatac--att---gtccctgcc 4169092  T
Q  175 aattgagctatgctcacggggac 197  Q
    || ||||||||||||||||||||    
T  4169091 aactgagctatgctcacggggac 4169069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 117
Target Start/End: Complemental strand, 11651146 - 11651116
Alignment:
Q  87 aattcacattttttaaggtgaataagtggga 117  Q
    |||||||||||||||||||||||||||||||    
T  11651146 aattcacattttttaaggtgaataagtggga 11651116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 19924874 - 19924836
Alignment:
Q  78 agtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  19924874 agtggctagaattcactttttttaaggtgaataagtggg 19924836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 20947868 - 20947793
Alignment:
Q  76 ctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaata 153  Q
    |||||| |||||||||||  ||||||| ||||||||||| |||||| ||||||| || || ||||||| ||| |||||    
T  20947868 ctagtggctagaattcac--tttttaaagtgaataagtgagatgtctgaagttcgaaccctaacccctgcatataata 20947793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 47355927 - 47355873
Alignment:
Q  68 caagtagcctagtgactagaattca-cattttttaaggtgaataagtgggatgtc 121  Q
    ||||||||||||||| ||||||||| | ||||||||  |||||||||||||||||    
T  47355927 caagtagcctagtgattagaattcatctttttttaaaatgaataagtgggatgtc 47355873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 47514314 - 47514260
Alignment:
Q  74 gcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagtt 128  Q
    ||||| ||||||||||||| |||||| |||||||||||||| | |||| ||||||    
T  47514314 gcctactgactagaattcagatttttcaaggtgaataagtgaggtgtctgaagtt 47514260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 5787576 - 5787530
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    ||||||||||||||||||||||||||   || |||||||||||||||||    
T  5787576 caagtagcctagtgactagaattcac--cttataaggtgaataagtggg 5787530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 14818435 - 14818468
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  14818435 tgtccctgccaactgagctatgctcacggggaca 14818468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 15265433 - 15265466
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  15265433 tgtccctgccaactgagctatgctcacggggaca 15265466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 21285336 - 21285455
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcat-gtcc 169  Q
    ||||||||||| ||||||||||| || |  |||||||||||||||| ||||||  |||| || |||  ||||| |||      |||| ||| ||| ||||    
T  21285336 gtagcctagtggctagaattcaccttat--aaggtgaataagtggggtgtccggggttcgaaccccggcccctgcat------ataacaatgcattgtcc 21285427  T
Q  170 ctgccaattgagctatgctcacggggac 197  Q
    ||||||| ||||||||||||||||||||    
T  21285428 ctgccaactgagctatgctcacggggac 21285455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 37449493 - 37449575
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||| |||||| ||| |||||||  ||||||| ||||||||||||||||||| | |||||||  || |||||| ||| |||||||    
T  37449493 gtagtctagtggctataattcac--tttttaaagtgaataagtgggatgtccaaggttcaaactccgacccctgcatataataat 37449575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 48007131 - 48007078
Alignment:
Q  76 ctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    |||||| ||||||||||| |||| ||||||||| ||||||||||| ||| ||||    
T  48007131 ctagtggctagaattcaccttttgtaaggtgaacaagtgggatgttcgaggttc 48007078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 3955042 - 3955098
Alignment:
Q  87 aattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccct 143  Q
    ||||||||||||||||| |||||||||||| |||| |  |||| |||||| ||||||    
T  3955042 aattcacattttttaagatgaataagtggggtgtctggggttcgaatcccgacccct 3955098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 5773248 - 5773196
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgt 120  Q
    ||||| ||||||||  |||||| ||| ||||| ||||||||||||||||||||    
T  5773248 caagtcgcctagtgggtagaatccacctttttcaaggtgaataagtgggatgt 5773196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 7465503 - 7465463
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggg 194  Q
    |||||||| |||||| ||||||| |||||||||||||||||    
T  7465503 ataataatgcatgtctctgccaactgagctatgctcacggg 7465463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 17305448 - 17305492
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggaca 198  Q
    |||| ||| |||||||||||||| |||||||||||||||| ||||    
T  17305448 ataacaatgcatgtccctgccaactgagctatgctcacggagaca 17305492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 27039596 - 27039545
Alignment:
Q  95 ttttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacat 147  Q
    ||||||||||||||||| |||| |||| ||||||| |||| ||||||||||||    
T  27039596 ttttttaaggtgaataaatggg-tgtctgaagttcgaatcacaacccctacat 27039545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 41139112 - 41139080
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||| ||||||||||||||||||||    
T  41139112 tgtccctgccaactgagctatgctcacggggac 41139080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 44409317 - 44409269
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||||| |||||||  |||||||||| ||||| ||||||||||||||||    
T  44409317 caagtaacctagtggttagaattcacctttttcaaggtgaataagtggg 44409269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 45267984 - 45268028
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggaca 198  Q
    ||||||||  ||||| ||||||| |||||||||||||||||||||    
T  45267984 ataataatatatgtctctgccaactgagctatgctcacggggaca 45268028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 46918974 - 46919022
Alignment:
Q  108 ataagtgggatgtccgaagttcaaatcccaacccctacatgtaataata 156  Q
    ||||||||| |||||||  ||| ||||||||||||||||| ||||||||    
T  46918974 ataagtggggtgtccgagattcgaatcccaacccctacatataataata 46919022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 48175004 - 48174960
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||| ||||||| |||||| |||||||| ||||||||||||    
T  48175004 ataataatgcatgtccttgccaactgagctatactcacggggaca 48174960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 37986845 - 37986909
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaa 132  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||  |||||||    
T  37986845 caagtagcctagtggctagaattcacctttttcaaggtgaataagtgggatgtccggggttcaaa 37986909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 38040379 - 38040260
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccc 170  Q
    ||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||| ||||| || | | |||||| |||      |||| ||| ||||||||    
T  38040379 gtagcctagtgactataattcacctttttcaagatgaataagtgggatgtccg-agttcgaacctcgacccctgcat------ataacaatgcatgtccc 38040287  T
Q  171 tgccaattgagctatgctcacggggac 197  Q
    |||||| ||||||||||||| ||||||    
T  38040286 tgccaactgagctatgctcatggggac 38040260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 39684339 - 39684236
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagct 183  Q
    |||||||||| |||||||||||||||||||||||||||||  ||| ||||||  ||||||||||      |||| ||| ||||| | | |||||||||||    
T  39684339 tagaattcaccttttttaaggtgaataagtgggatgtccggggtttaaatcctgacccctacat------ataacaatgcatgttcataccaattgagct 39684246  T
Q  184 atgctcacgg 193  Q
    ||||||||||    
T  39684245 atgctcacgg 39684236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 31004117 - 31004179
Alignment:
Q  77 tagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaac 139  Q
    |||||||||||||| || ||||||||||||||||||||| |||||||  ||||||| ||||||    
T  31004117 tagtgactagaatttaccttttttaaggtgaataagtggaatgtccggggttcaaaccccaac 31004179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 40384359 - 40384281
Alignment:
Q  77 tagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| || |||| || || ||| |||||||    
T  40384359 tagtggctagaattcaccttttttaaggtgaataagtggggtgtccggagttcgaaccccagccgctgcatataataat 40384281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 9963528 - 9963409
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattca-tgtcc 169  Q
    |||||||||||  ||||||||||  ||| |||||||||||||||||  ||||||||||| || |||||||||| |||      |||| ||| || |||||    
T  9963528 gtagcctagtggttagaattcac--tttataaggtgaataagtggggggtccgaagttcgaaccccaacccctgcat------ataacaatgcattgtcc 9963437  T
Q  170 ctgccaattgagctatgctcacggggac 197  Q
    ||||||| |||||||| |||||||||||    
T  9963436 ctgccaactgagctatactcacggggac 9963409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 21017586 - 21017671
Alignment:
Q  71 gtagcctagtgactagaattcacattttt-taaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||||||| || ||||||||||| || || ||||||||||||||||||||||||  ||||||| |||| || |||||| |||||||    
T  21017586 gtagcctactggctagaattcaccttattataaggtgaataagtgggatgtccggggttcaaaccccagccactacatataataat 21017671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 3535917 - 3535969
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||||||||||  |||||||||| |||||||||||||||||||||| ||||||    
T  3535917 gtagcctagtggttagaattcactttttttaaggtgaataagtggggtgtccg 3535969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 14487676 - 14487591
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||| ||| || ||||||||||| || |  |||||||||||||||||| ||||| |||| || |||||||||||||| |||||||    
T  14487676 caagtagtctaatggctagaattcaccttat--aaggtgaataagtgggatatccgaggttcgaaccccaacccctacatataataat 14487591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 24651226 - 24651166
Alignment:
Q  95 ttttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||| || |||||||||||||||||| ||||||| || |||||||||||||| |||||||    
T  24651226 tttttcaatgtgaataagtgggatgtctgaagttcgaaccccaacccctacatataataat 24651166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 198
Target Start/End: Original strand, 11246473 - 11246596
Alignment:
Q  69 aagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtc 168  Q
    |||||| |||||| ||||||||||| ||||| ||| ||||||||||||||||| |  |||  |  ||| |||||| |||      |||| ||| ||||||    
T  11246473 aagtagtctagtggctagaattcacctttttcaagctgaataagtgggatgtctggggtttgagccccgacccctgcat------ataacaatgcatgtc 11246566  T
Q  169 cctgccaattgagctatgctcacggggaca 198  Q
    |||||||| |||||||||||||||| ||||    
T  11246567 cctgccaactgagctatgctcacggtgaca 11246596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 22687862 - 22687940
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgt 149  Q
    |||| ||||||  |||||||||| ||||| |||||||||||||||| ||| ||  |||||||  |||||||||||||||    
T  22687862 gtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgttcggggttcaaactccaacccctacatgt 22687940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 31556931 - 31556812
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccct 171  Q
    |||||||||| |||||||||||  |||| |||||||||||||||| ||||||  |||| ||  || |||||| |||      |||| ||| |||||||||    
T  31556931 tagcctagtggctagaattcacccttttcaaggtgaataagtggggtgtccggggttcgaactccgacccctgcat------ataacaatgcatgtccct 31556838  T
Q  172 gccaattgagctatgctcacggggac 197  Q
    || || ||||||||||| ||||||||    
T  31556837 gctaagtgagctatgctaacggggac 31556812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 34325382 - 34325259
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    |||||||| ||||| ||||||||||  ||||||||||||||||||| |||||| |||  ||| || ||||  |||| |||      |||||||| |||||    
T  34325382 caagtagcttagtggctagaattcattttttttaaggtgaataagttggatgttcgagattcgaaccccagtccctgcat------ataataatgcatgt 34325289  T
Q  168 ccctgccaattgagctatgctcacggggac 197  Q
    ||||| ||| ||||| ||| ||||||||||    
T  34325288 ccctgtcaactgagccatgttcacggggac 34325259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 20220199 - 20220154
Alignment:
Q  77 tagtgactagaattcacattttttaaggtgaataagtgggatgtcc 122  Q
    |||||| |||||||||||||||||||||| |||||||||| |||||    
T  20220199 tagtgattagaattcacattttttaaggtaaataagtggggtgtcc 20220154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 36116858 - 36116905
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  36116858 caagtagcctagtg-ctagaattcacatttttgaagatgaataagtggg 36116905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 28537252 - 28537197
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||||||||||||| |||||||||||  |||| || ||||||||||||| ||||||    
T  28537252 caagtagcctagtggctagaattcaccattttcaaagtgaataagtggggtgtccg 28537197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 19608728 - 19608643
Alignment:
Q  69 aagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||||| |||||| ||||||||||  ||||||||||||||||||||   |||||| ||||| || ||| |||||| ||| |||||||    
T  19608728 aagtagtctagtg-ctagaattcattttttttaaggtgaataagtgaagtgtccggagttcgaaccccgacccctgcatataataat 19608643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 22687936 - 22687970
Alignment:
Q  163 catgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||||| ||||||||||||||||||||    
T  22687936 catgtccctgccaactgagctatgctcacggggac 22687970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 27006457 - 27006383
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccc 142  Q
    |||||||||||  | ||||||||||| ||||| |||||||||||||||  |||||| ||||| || ||| |||||    
T  27006457 caagtagcctaacggctagaattcacctttttcaaggtgaataagtggagtgtccggagttcgaaccccgacccc 27006383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 37303959 - 37303925
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggacat 199  Q
    |||||||||||| ||||||||||||||||||||||    
T  37303959 tgtccctgccaactgagctatgctcacggggacat 37303925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 42260713 - 42260759
Alignment:
Q  83 ctagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    ||||||||||  ||||| ||||||||||||||||||||||| |||||    
T  42260713 ctagaattcatctttttaaaggtgaataagtgggatgtccggagttc 42260759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 843351 - 843433
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||| ||||||||||   ||| ||||||||||||||||| ||||||  |||| || |||  ||||||||| |||||||    
T  843351 gtagcctagtggctagaattcaa--tttataaggtgaataagtggggtgtccggggttcgaaccccgtcccctacatataataat 843433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 2029112 - 2029194
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataata 156  Q
    |||||||||| ||||||||||| || |  |||||||||||||||| ||| ||  |||| |||||| |||||| ||| ||||||||    
T  2029112 tagcctagtggctagaattcaccttat--aaggtgaataagtggggtgttcggggttcgaatcccgacccctgcatataataata 2029194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 6014891 - 6014809
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||| |||||||||||   || |||| |||||||||| | |||||| |||||||| ||| | |||||||| |||||||    
T  6014891 gtagcctagtggctagaattcac--cttataagatgaataagtgaggtgtccggagttcaaaccccgatccctacatataataat 6014809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 9196152 - 9196185
Alignment:
Q  164 atgtccctgccaattgagctatgctcacggggac 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  9196152 atgtccctgccaattgaactatgctcacggggac 9196185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 10943828 - 10943778
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    ||||||||||| |||||||||||  ||||||| ||||||||||||| ||||||    
T  10943828 gtagcctagtggctagaattcac--tttttaaagtgaataagtggggtgtccg 10943778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 30120065 - 30119951
Alignment:
Q  78 agtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaat 177  Q
    |||| |||||||| ||  ||||||| ||||||||||| | |||||||| ||| || ||||||| | || |      |||||||| ||||||| || |||     
T  30120065 agtggctagaatttaccatttttaaagtgaataagtgaggtgtccgaaattcgaaccccaacctcaacgt------ataataatgcatgtccttgtcaac 30119972  T
Q  178 tgagctatgctcacggggaca 198  Q
    |||||||||||||||||||||    
T  30119971 tgagctatgctcacggggaca 30119951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 33600008 - 33599971
Alignment:
Q  86 gaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    ||||| || |||||||||||||||||||||||||||||    
T  33600008 gaatttaccttttttaaggtgaataagtgggatgtccg 33599971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 4793994 - 4793962
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    ||||||| |||||||||||||||||||||||||    
T  4793994 tgtccctaccaattgagctatgctcacggggac 4793962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 5891136 - 5891084
Alignment:
Q  101 aaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaata 153  Q
    ||||||||| |||||| |||||||||||| || |||||||| ||||| |||||    
T  5891136 aaggtgaatgagtggggtgtccgaagttcgaaccccaacccttacatataata 5891084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 17137848 - 17137892
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgg 115  Q
    |||||||||||  |||||||||| ||||| |||||||||||||||    
T  17137848 gtagcctagtggttagaattcacgtttttcaaggtgaataagtgg 17137892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 30622298 - 30622354
Alignment:
Q  100 taaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataata 156  Q
    ||||||||||||||||  | ||||||||||||||||||| | |||||| ||| ||||    
T  30622298 taaggtgaataagtggagtatccgaagttcaaatcccaatcactacatataacaata 30622354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 31280441 - 31280477
Alignment:
Q  158 taattcatgtccctgccaattgagctatgctcacggg 194  Q
    |||| |||||||||||||| |||||||||||||||||    
T  31280441 taatacatgtccctgccaactgagctatgctcacggg 31280477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 34010649 - 34010597
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||| |||||||||||||||||| || | |||||||||||| || ||||||||    
T  34010649 gtagtctagtgactagaattcaccttatataaggtgaataaatgagatgtccg 34010597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 36742025 - 36742065
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggg 194  Q
    |||| |||||||||| ||||||| |||||||||||||||||    
T  36742025 ataacaattcatgtctctgccaactgagctatgctcacggg 36742065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 1156 - 1033
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    |||||||  ||||| ||||||||||| ||||| |||||||||||||||| |||| |  |||| || |||| |||||||||      ||||| || |||||    
T  1156 caagtagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaaccccagcccctacat------ataattatgcatgt 1063  T
Q  168 ccctgccaattgagctatgctcacggggac 197  Q
    |||| |||| ||||||||||||||||||||    
T  1062 ccctaccaactgagctatgctcacggggac 1033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 14011020 - 14011139
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccct 171  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||||||||| |||| ||  ||  ||||| |||      |||| ||| |||||||||    
T  14011020 tagcctagtggttagaattcacattttttaagatgaataagtgggatgtccgaggttcgaactccggcccctgcat------ataacaatgcatgtccct 14011113  T
Q  172 gccaattgagctatgctcacggggac 197  Q
    ||||| ||| |||||||||| |||||    
T  14011114 gccaactgaactatgctcacagggac 14011139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 194
Target Start/End: Complemental strand, 7345544 - 7345425
Alignment:
Q  69 aagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtc 168  Q
    ||||| |||| ||| |||||||||| |||||||||||||||||||||| |||  | ||||  || ||| |||||| |||      |||||||| ||||||    
T  7345544 aagtaacctaatgattagaattcaccttttttaaggtgaataagtggggtgtttggagttggaagcccgacccctgcat------ataataatgcatgtc 7345451  T
Q  169 cctgccaattgagctatgctcacggg 194  Q
    |||||||| |||| ||||||||||||    
T  7345450 cctgccaactgagttatgctcacggg 7345425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 28979136 - 28979021
Alignment:
Q  75 cctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgcc 174  Q
    |||||| |||| |||||||||||||||||||||||||||| | ||||||  |||| ||| || ||||||||||      |||| ||| |||||||||  |    
T  28979136 cctagtaactataattcacattttttaaggtgaataagtgaggtgtccggggttcgaattccgacccctacat------ataacaatgcatgtccctatc 28979043  T
Q  175 aattgagctatgctcacgggga 196  Q
    || ||| |||||||||||||||    
T  28979042 aactgaactatgctcacgggga 28979021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 42711261 - 42711210
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcc 135  Q
    |||||||||||||||| ||||  ||||||||||||||||| |||||||||||    
T  42711261 tagaattcacatttttcaaggcaaataagtgggatgtccggagttcaaatcc 42711210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 10292440 - 10292345
Alignment:
Q  97 ttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcat-gtccctgccaattgagctatgctcacgggg 195  Q
    |||||| ||||||||||||| ||||||| |||| |||| || ||||| |||      |||||||| ||| ||||||||||| ||||||||||||||||||    
T  10292440 ttttaaagtgaataagtggggtgtccgaggttcgaatctcagcccctgcat------ataataatgcattgtccctgccaactgagctatgctcacgggg 10292347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 16935684 - 16935575
Alignment:
Q  88 attcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagctatgc 187  Q
    |||||||||||| ||| |||||||||||| |||| |  |||| || ||||||||||  || ||||||| ||||| |||||| ||||||| |||| ||||     
T  16935684 attcacatttttcaagttgaataagtggggtgtctggggttcgaaccccaacccctgtatataataat-ataatgcatgtctctgccaactgagatatgt 16935586  T
Q  188 tcacggggaca 198  Q
    |||| ||||||    
T  16935585 tcacagggaca 16935575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 39855135 - 39855209
Alignment:
Q  70 agtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaaccccta 144  Q
    |||| |||||||| |||||||||  ||||||||||| |||||||||  |||| || ||||||| |||||||||||    
T  39855135 agtaacctagtgattagaattcatcttttttaaggtaaataagtggagtgtctgaggttcaaaccccaaccccta 39855209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 40329208 - 40329270
Alignment:
Q  93 cattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||||| |||| ||||||||||||||||||||||||||||  |||||| ||| || |||||||    
T  40329208 cattttataagatgaataagtgggatgtccgaagttcaaactccaaccgctatatataataat 40329270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 36593295 - 36593258
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtc 121  Q
    |||||||||||||||||||||||||||||| |||||||    
T  36593295 tagaattcacattttttaaggtgaataagttggatgtc 36593258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 44254291 - 44254344
Alignment:
Q  69 aagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtcc 122  Q
    ||||||| ||||| ||| ||||||||||||| ||||||||||||| ||||||||    
T  44254291 aagtagcatagtggctaaaattcacatttttcaaggtgaataagtaggatgtcc 44254344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 22438570 - 22438622
Alignment:
Q  76 ctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagtt 128  Q
    ||||||| |||||||||| |||||||||||||||||||||  |||||| ||||    
T  22438570 ctagtgattagaattcaccttttttaaggtgaataagtggagtgtccggagtt 22438622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 198
Target Start/End: Original strand, 25470825 - 25470948
Alignment:
Q  69 aagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtc 168  Q
    |||||| |||||| ||||||||||| || || ||||||||||| |||| ||||||| |||| || ||| |||    |||| ||| |||||||| |||||     
T  25470825 aagtagtctagtggctagaattcaccttcttcaaggtgaataaatggggtgtccgaggttcgaaccccgacc----catg-aat-ataataatgcatgtt 25470918  T
Q  169 cctgccaattgagctatgctcacggggaca 198  Q
    |||| ||| |||| ||||||||||||||||    
T  25470919 cctgtcaactgagttatgctcacggggaca 25470948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 39208847 - 39208903
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccga 124  Q
    ||||||| |||||| ||||||||||| ||||| |||||||||||||| | |||||||    
T  39208847 caagtagtctagtggctagaattcacctttttaaaggtgaataagtgaggtgtccga 39208903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 39432333 - 39432430
Alignment:
Q  95 ttttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagctatgctcacggg 194  Q
    ||||| || ||||||||||||| |||| || |||| || |||||||||| |||      |||| | | |||||||||||||| |||||||||||||||||    
T  39432333 tttttcaaagtgaataagtggggtgtctgaggttcgaaccccaacccctgcat------ataacattgcatgtccctgccaactgagctatgctcacggg 39432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 43468689 - 43468762
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacat 147  Q
    |||||||||| ||||||||||| || |  |||||||||||||||| |||||| ||||| || ||| ||||||||||    
T  43468689 tagcctagtggctagaattcaccttat--aaggtgaataagtggggtgtccggagttcgaaccccgacccctacat 43468762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 220340 - 220395
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    ||||||| ||||||  |||||||||| ||||| |||||||||||||||| ||||||    
T  220340 caagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccg 220395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 689495 - 689550
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    ||||||| ||||||  |||||||||| ||||| |||||||||||||||| ||||||    
T  689495 caagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccg 689550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 733963 - 734018
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    ||||||| ||||||  |||||||||| ||||| |||||||||||||||| ||||||    
T  733963 caagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccg 734018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 857859 - 857914
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    ||||||| ||||||  |||||||||| ||||| |||||||||||||||| ||||||    
T  857859 caagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccg 857914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 18030765 - 18030695
Alignment:
Q  74 gcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctac 145  Q
    ||||||||  |||||||||||||||| ||||||||||||| || ||| ||  |||| |||||||||||||||    
T  18030765 gcctagtggttagaattcacattttt-aaggtgaataagtagggtgttcggggttcgaatcccaacccctac 18030695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 23239209 - 23239151
Alignment:
Q  100 taaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataat 158  Q
    ||||||||||||||||| ||||||  ||||||| ||| |||||||||| ||| ||||||    
T  23239209 taaggtgaataagtggggtgtccggggttcaaaccccgacccctacatataacaataat 23239151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 13654824 - 13654865
Alignment:
Q  87 aattcacattttttaaggtgaataagtgggatgtccgaagtt 128  Q
    |||||||||||||||| ||||||||||||| |||||| ||||    
T  13654824 aattcacattttttaaagtgaataagtggggtgtccggagtt 13654865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 13713466 - 13713507
Alignment:
Q  87 aattcacattttttaaggtgaataagtgggatgtccgaagtt 128  Q
    |||||||||||||||| ||||||||||||| |||||| ||||    
T  13713466 aattcacattttttaaagtgaataagtggggtgtccggagtt 13713507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 14683988 - 14683938
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||| |||||||||||||||||| || |  |||||||||||||||||||||||    
T  14683988 gtagtctagtgactagaattcaccttat--aaggtgaataagtgggatgtccg 14683938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 24074618 - 24074536
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||| ||||||||||| || |  |||||||||||||| | ||||||| |||| ||   |||||||||||| |||||||    
T  24074618 gtagcctagtggctagaattcaccttat--aaggtgaataagtgaggtgtccgaggttcgaacttcaacccctacatataataat 24074536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 27821892 - 27821929
Alignment:
Q  77 tagtgactagaattcacattttttaaggtgaataagtg 114  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  27821892 tagtggctagaattcaccttttttaaggtgaataagtg 27821929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 29937247 - 29937202
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggacat 199  Q
    |||| ||| ||||||||| |||| ||||||||||||||||||||||    
T  29937247 ataacaatacatgtccctaccaactgagctatgctcacggggacat 29937202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 2800044 - 2800012
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||| ||||||||||||||||||||    
T  2800044 tgtccctgccaactgagctatgctcacggggac 2800012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 3212956 - 3212916
Alignment:
Q  76 ctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||||||||| ||||||||||||| || |||||||||||||    
T  3212956 ctagtgactataattcacatttttaaaagtgaataagtggg 3212916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 6325378 - 6325303
Alignment:
Q  76 ctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaat 152  Q
    |||||| ||||||||||| ||||| ||||||||| |||||| |||| |  ||||||| |||||||||| ||| ||||    
T  6325378 ctagtggctagaattcacctttttcaaggtgaatgagtggggtgtctg-ggttcaaaccccaacccctgcatataat 6325303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 6372582 - 6372630
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||||||||||||| | ||||||||||||||| ||  ||||||||||||    
T  6372582 caagtagcctagtggcaagaattcacatttttcaatatgaataagtggg 6372630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 22847250 - 22847286
Alignment:
Q  78 agtgactagaattcacattttttaaggtgaataagtg 114  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  22847250 agtggctagaattcaccttttttaaggtgaataagtg 22847286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 26773696 - 26773732
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgt 120  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  26773696 tagaattcacattttttaagatgaataagtggaatgt 26773732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 37128762 - 37128730
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    ||||||||||||||||||||||||||| |||||    
T  37128762 tgtccctgccaattgagctatgctcacagggac 37128730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 37989035 - 37989083
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaa 132  Q
    ||||||| | ||||||||||||||||||||||| ||| || ||||||||    
T  37989035 tagaatttatattttttaaggtgaataagtggggtgttcggagttcaaa 37989083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 41793045 - 41793073
Alignment:
Q  169 cctgccaattgagctatgctcacggggac 197  Q
    |||||||||||||||||||||||||||||    
T  41793045 cctgccaattgagctatgctcacggggac 41793073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 26669637 - 26669760
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgt 167  Q
    |||||||  ||||| ||||||||||| ||||| |||||||||||||||| |||| |  |||| || |||| |||||||||      ||||| || |||||    
T  26669637 caagtagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaaccccagcccctacat------ataattatgcatgt 26669730  T
Q  168 ccctgccaattgagctatgctcacggggac 197  Q
    |||| |||| ||||||||||||||||||||    
T  26669731 ccctaccaactgagctatgctcacggggac 26669760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 30668162 - 30668210
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  30668162 caagtagtctagtgactataattcacattttttaaggtgaataagtggg 30668210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 6455570 - 6455483
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    |||||||||||||| ||||||||||  ||||| ||||||||||||| || |||||| ||||| || |||| ||| ||||| |||||||    
T  6455570 caagtagcctagtgtctagaattcatctttttcaaggtgaataagtagggtgtccggagttcgaaccccagcccatacatataataat 6455483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 7234067 - 7234007
Alignment:
Q  83 ctagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccct 143  Q
    ||||||||||| ||||| |||||||||||||||| ||||||| ||||||| |||| |||||    
T  7234067 ctagaattcacctttttcaaggtgaataagtggggtgtccgaggttcaaaccccagcccct 7234007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 3448377 - 3448344
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    ||||||||||||||||||||||||||||||||||    
T  3448377 tgtccctgccaattgagctatgctcacggggaca 3448344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 6219391 - 6219346
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggacat 199  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||||    
T  6219391 ataataatgcatgtccctgccaactgagctatgttcacggggacat 6219346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 29204863 - 29204908
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||||    
T  29204863 tagaattcactttttttaaggtgaataagtggggtgttcgaagttc 29204908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 3030068 - 3029944
Alignment:
Q  84 tagaattcacatttttt-aaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcatgtccctgccaattgagc 182  Q
    ||||||||||||||||| |||||||||||||||| |||||   |||| ||  |||||| ||||||      ||||||||| ||||||||||||| | ||     
T  3030068 tagaattcacatttttttaaggtgaataagtggggtgtccagggttcgaactccaaccactacat------ataataatttatgtccctgccaactaagt 3029975  T
Q  183 tatgctcacggggacatttctatttcattttt 214  Q
    |||||||||| |||| ||| ||||| ||||||    
T  3029974 tatgctcacgaggac-tttttattttattttt 3029944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 34524912 - 34524868
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggaca 198  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||    
T  34524912 ataacaatgcatgtccctgccaactgagctatgctcacggggaca 34524868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 3037569 - 3037628
Alignment:
Q  70 agtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    |||||| |||||  |||||||||| ||||||||| |||||||||||| |||| |||||||    
T  3037569 agtagcttagtggttagaattcaccttttttaagatgaataagtgggttgtctgaagttc 3037628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 16251506 - 16251562
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttc 129  Q
    |||||||||||||||||||||||   || ||||||||||||||||| |||||| |||||    
T  16251506 gtagcctagtgactagaattcac--cttataaggtgaataagtggggtgtccggagttc 16251562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 34675784 - 34675839
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccg 123  Q
    |||||||  ||||| |||||||||||||||||||| |||||||| |||| ||||||    
T  34675784 caagtagtgtagtggctagaattcacattttttaaagtgaataactggggtgtccg 34675839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 6144052 - 6143958
Alignment:
Q  97 ttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataataataattcat-gtccctgccaattgagctatgctcacgggg 195  Q
    |||||| ||||||||||||| ||||||  |||| || ||| ||||||||||      |||||||| ||| ||||||||||| ||||||||||||||||||    
T  6144052 ttttaaagtgaataagtggggtgtccggggttcgaa-cccgacccctacat------ataataatgcattgtccctgccaactgagctatgctcacgggg 6143960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 17305633 - 17305580
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtcc 122  Q
    |||||||| |||||| |||||||||| ||||| |||||||||||||||| |||||    
T  17305633 caagtagcttagtgattagaattcac-tttttcaaggtgaataagtggggtgtcc 17305580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 19135966 - 19135924
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacgggga 196  Q
    |||||||| ||||||||||||||  ||||||||||||||||||    
T  19135966 ataataatgcatgtccctgccaaccgagctatgctcacgggga 19135924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 2945621 - 2945588
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  2945621 tgtccctgccaactgagctatgctcacggggaca 2945588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 9064891 - 9064858
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggaca 198  Q
    |||||||||||| |||||||||||||||||||||    
T  9064891 tgtccctgccaactgagctatgctcacggggaca 9064858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 22730688 - 22730741
Alignment:
Q  77 tagtgactagaattcacatt-ttttaaggtgaataagtgggatgtccgaagttc 129  Q
    ||||| ||||||||||| || |||||||||||||||||||| ||||||| ||||    
T  22730688 tagtggctagaattcaccttattttaaggtgaataagtggggtgtccgaggttc 22730741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 9438417 - 9438332
Alignment:
Q  68 caagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataat 155  Q
    ||||||||||||||  ||||||||||   || |||||||||| |||||| ||||||  |||| || |||||||||| ||| |||||||    
T  9438417 caagtagcctagtggttagaattcac--cttataaggtgaatgagtggggtgtccggggttcgaaccccaacccctgcatataataat 9438332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 14981772 - 14981804
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||| ||||||||||||||||||||    
T  14981772 tgtccctgccaactgagctatgctcacggggac 14981804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 16119396 - 16119352
Alignment:
Q  68 caagtagcctagtgactagaattcacatt-ttttaaggtgaataa 111  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||    
T  16119396 caagtagtctagtggctagaattcacatttttttaaggtgaataa 16119352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 24257029 - 24256985
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||||||||| |||||||| || ||||| ||||||||||||||||    
T  24257029 tagcctagtggctagaatttacttttttcaaggtgaataagtggg 24256985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 32540945 - 32540977
Alignment:
Q  84 tagaattcacattttttaaggtgaataagtggg 116  Q
    |||||||||| ||||||||||||||||||||||    
T  32540945 tagaattcactttttttaaggtgaataagtggg 32540977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 62815 - 62742
Alignment:
Q  83 ctagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacatgtaataata 156  Q
    ||||||||||| ||||||||| |||||||||||| ||||||| |||| || ||||||||||| || ||||||||    
T  62815 ctagaattcactttttttaagatgaataagtgggttgtccgatgttcgaaccccaacccctatatataataata 62742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 37310 - 37360
Alignment:
Q  72 tagcctagtgactagaattcacattttttaaggtgaataagtgggatgtcc 122  Q
    |||||||||| ||| | |||||||||||||||||||||||||||| |||||    
T  37310 tagcctagtggctaaatttcacattttttaaggtgaataagtggggtgtcc 37360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 440513 - 440468
Alignment:
Q  71 gtagcctagtgactagaattcacattttttaaggtgaataagtggg 116  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||    
T  440513 gtagcctagtggttagaattcaccttttttaaggtgaataagtggg 440468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 34091 - 34135
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggaca 198  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||    
T  34091 ataacaatgcatgtccctgccaactgagctatgctcacggggaca 34135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 4557 - 4511
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggacatt 200  Q
    |||| ||| |||||||||||||| |||||||||||||||| ||||||    
T  4557 ataacaatgcatgtccctgccaactgagctatgctcacggagacatt 4511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 4577 - 4531
Alignment:
Q  154 ataataattcatgtccctgccaattgagctatgctcacggggacatt 200  Q
    |||| ||| |||||||||||||| |||||||||||||||| ||||||    
T  4577 ataacaatgcatgtccctgccaactgagctatgctcacggagacatt 4531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 19374 - 19452
Alignment:
Q  69 aagtagcctagtgactagaattcacattttttaaggtgaataagtgggatgtccgaagttcaaatcccaacccctacat 147  Q
    |||||||||| ||  |||||||||| ||||| || |||||||| || | ||||||| ||||||  ||||||||||||||    
T  19374 aagtagcctattgcttagaattcacctttttcaaagtgaataaatgaggtgtccgaggttcaatccccaacccctacat 19452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 22849 - 22882
Alignment:
Q  89 ttcacattttttaaggtgaataagtgggatgtcc 122  Q
    |||||||||||||||||||||||||||| |||||    
T  22849 ttcacattttttaaggtgaataagtggggtgtcc 22882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 4875 - 4907
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||| ||||||||||||||||||||    
T  4875 tgtccctgccaactgagctatgctcacggggac 4907  T

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Target: scaffold0112 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 18001 - 18033
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    ||||||| |||||||||||||||||||||||||    
T  18001 tgtccctaccaattgagctatgctcacggggac 18033  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 25051 - 25019
Alignment:
Q  165 tgtccctgccaattgagctatgctcacggggac 197  Q
    |||||||||||| ||||||||||||||||||||    
T  25051 tgtccctgccaactgagctatgctcacggggac 25019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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