View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_low_53 (Length: 215)
Name: NF6026_low_53
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 45361809 - 45361629
Alignment:
| Q |
17 |
atgtataaatgtttattatgctcattgcacgattcatatgttgcaattagcattggttacatcatattgagaagttgagttcattcacaacatttttact |
116 |
Q |
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| T |
45361809 |
atgtataaatgtttattatgctcattgcacgattcatatgttgcaattagcattggttacatcatattgagaagttgagttcattcacaacatttttact |
45361710 |
T |
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| Q |
117 |
agtttgacaaccnnnnnnnagggaaaccgtataaatcttgttgttagttctctaaagaatatcatgattttgatcggtagt |
197 |
Q |
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| T |
45361709 |
agtttgacaacctttttttagggaaaccgtataaatcttgttgttagttctctaaagaatatcatgattttgatcggtagt |
45361629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 39212371 - 39212468
Alignment:
| Q |
20 |
tataaatgtttattatgctcattgcacgattcatatgttgcaattagcattggttacatcatattgagaagttgagttcattcacaacatttttacta |
117 |
Q |
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| T |
39212371 |
tataaatgtttattatgttcattgcacggttcatatgttgcaattatcatcggttacatcatttagagaagttgagttcattcacaatatctttacta |
39212468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 8590813 - 8590764
Alignment:
| Q |
141 |
aaccgtataaatcttgttgttagttctctaaagaatatcatgattttgat |
190 |
Q |
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| T |
8590813 |
aaccttataaatgttgttgttagctctccaaagaatatcatgattttgat |
8590764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 6864108 - 6864151
Alignment:
| Q |
154 |
ttgttgttagttctctaaagaatatcatgattttgatcggtagt |
197 |
Q |
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| T |
6864108 |
ttgttgttagttctccaaaaaatatcatgattttgattggtagt |
6864151 |
T |
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