View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6028_high_1 (Length: 627)
Name: NF6028_high_1
Description: NF6028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6028_high_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 117 - 627
Target Start/End: Original strand, 36998286 - 36998796
Alignment:
| Q |
117 |
agcgagtataatttatgtataattattaaactctcctaattttttatttattcaagcaaagtgaaattacaactccatgtgagcatgtcacagaatgtcc |
216 |
Q |
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| T |
36998286 |
agcgagtataatttatgtataattattaaactctcctaattttttatttattcaagcaaagtgaaattacaactccatgtgagcatgtcacagaatgtcc |
36998385 |
T |
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| Q |
217 |
cacgtacataaataaattggaacatccacaagctcagaccaaaaaagaaaaggaaatgaaacaaacataaattaaacctcttaagacagacaatgactta |
316 |
Q |
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| T |
36998386 |
cacgtacataaataaattggaacatccacaagctcagaccaaaaaagaaaaggaaatgaaacaaacataaattaaacctcttaagacagacaatgactta |
36998485 |
T |
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| Q |
317 |
agaggaaaacaaacatacgaccacataaactaaaccttattttgtgtgtaatgaagcagttagctatcattgtattcatttataagtaccaccagtggta |
416 |
Q |
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| T |
36998486 |
agaggaaaacaaacatacaaccacataaactaaaccttattttgtgtgtaatgaagcagttagctatcattgtattcatttataagtaccaccagtggtg |
36998585 |
T |
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| Q |
417 |
taccctgtggcatttggatttccaccaacacgggtattatgggccgtggcggtcccatctgtgcctctattagtcccaatagggtgtgagcccaccacac |
516 |
Q |
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| T |
36998586 |
taccctgtggcatttggatttccaccaacacgggtattatgggccgtggcggtcccatctgtgcctctattagtcccaatagggtgtgagcccaccacac |
36998685 |
T |
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| Q |
517 |
cgtcgacgacatggcccgtgggctgtccagttccatgaccaggcatggctgacatctgatgtgccccagtgggatgtccataattcccagtggtagagta |
616 |
Q |
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| T |
36998686 |
cgtcgacgacatggcccgtgggctgtccagttccatgaccaggcatggctgacatctgatgtgccccagtgggatgtccataattcccagtggtagagta |
36998785 |
T |
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| Q |
617 |
tgtggcggtcc |
627 |
Q |
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| T |
36998786 |
tgtggcggtcc |
36998796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 36998150 - 36998251
Alignment:
| Q |
12 |
tcatcagttttgaatgtttctttggaagaaggctatgtcgaaaccattagttctatttaattccttnnnnnnncattgttctatttaattaaaaatagaa |
111 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
36998150 |
tcatcagtttttaacgtttctttggaagaaggctatgtcgaaaccattagttctatttaattccttaaaaaaacattgttctatttaattaaaaatacaa |
36998249 |
T |
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| Q |
112 |
aa |
113 |
Q |
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|| |
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| T |
36998250 |
aa |
36998251 |
T |
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Back To:
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