View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6028_high_2 (Length: 450)
Name: NF6028_high_2
Description: NF6028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6028_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 150 - 440
Target Start/End: Original strand, 35919129 - 35919419
Alignment:
| Q |
150 |
gtaggatttggtggacgctatatacaatctatctgaagcattacctcgtcgatctgttatcataaattcggcaacaggttctgtatcagaggttggcctt |
249 |
Q |
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| T |
35919129 |
gtaggatttggtggacgctatatacaatctatctgaagcattacctcgtcgatctgttatcataaattcggcaacaggttctgtatcagaggttggcctt |
35919228 |
T |
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| Q |
250 |
tttgatccaaatggtcctcctaacaagcgccaggtaattaaaggtccaaaatctgataaaactttgcatcatatcgcaatctgtaaagcaattaattttt |
349 |
Q |
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| T |
35919229 |
tttgatccaaatggtcctcctaacaagcgccaggtaattaaaggtccaaaatctgataaaactttgcatcatatcgcaatctgtaaagcaattaattttt |
35919328 |
T |
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| Q |
350 |
ctcttatatcttataatttgtgcgcgtgtttgcttgcaggtaaaatttcagataattactttagctgtaaactgtctcgttgatgatgatg |
440 |
Q |
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| T |
35919329 |
ctcttatatcttataatttgtgcgcgtgtttgcttgcaggtaaaatttcagataattactttagctgtaatctgtctcgttgatgatgatg |
35919419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 35918997 - 35919076
Alignment:
| Q |
18 |
acattcacccctcatataatgaatttgaatgctggtcaggtagcataactttaattaaccaatcttcgcattccatatgc |
97 |
Q |
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| T |
35918997 |
acattcacccctcatataatgaatttgaatgctggtcaggtagtataactttaattaaccaatcttcgcattccatatgc |
35919076 |
T |
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