View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6028_high_3 (Length: 409)

Name: NF6028_high_3
Description: NF6028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6028_high_3
NF6028_high_3
[»] chr4 (1 HSPs)
chr4 (12-245)||(9368155-9368391)
[»] chr5 (2 HSPs)
chr5 (12-247)||(22377450-22377697)
chr5 (189-247)||(21116924-21116982)
[»] chr3 (3 HSPs)
chr3 (100-218)||(41929532-41929656)
chr3 (290-360)||(49985040-49985110)
chr3 (257-298)||(49984669-49984710)
[»] scaffold0077 (6 HSPs)
scaffold0077 (119-218)||(51094-51197)
scaffold0077 (119-218)||(60842-60945)
scaffold0077 (14-75)||(50741-50801)
scaffold0077 (14-75)||(60489-60549)
scaffold0077 (173-218)||(51294-51339)
scaffold0077 (173-218)||(61042-61087)
[»] chr7 (2 HSPs)
chr7 (351-391)||(36998839-36998879)
chr7 (206-247)||(23651578-23651619)
[»] scaffold0039 (1 HSPs)
scaffold0039 (206-247)||(79980-80021)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 9368391 - 9368155
Alignment:
Q  12 aggatggttgtaagttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgcagttaacaaatttttcccttgcatcagttacatgaag 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||    
T  9368391 aggatggttgtaagttgcaattgtttcaaggtttaaacgtacctgcagttttctttttcttgcggtaaacaaatttttcccttgcaccagttacgtgaag 9368292  T
Q  112 ttacttctgaagttattcttttttg---tttattttaaattaaaaatgaagttaaagtgagtaaattagagtaaccgttgagggtaattatggaagtaaa 208  Q
    |||||||||||||||||||||||||   ||| |||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  9368291 ttacttctgaagttattcttttttgttttttttttttaaataaaaatgaagttaaagtgagtaaattagagtaacctttgagggtaattatgaaagtaaa 9368192  T
Q  209 ttaggctacattaaaacaaaagtattgactttattaa 245  Q
    ||||||||||   |||||||||||||| |||||||||    
T  9368191 ttaggctacaccgaaacaaaagtattgcctttattaa 9368155  T

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Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 22377450 - 22377697
Alignment:
Q  12 aggatggttgtaagttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgcagttaacaaatttttcccttgcatcagttacatgaag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||||    
T  22377450 aggatggttgtaagttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgcggttaacaaattttttccttacaccagttacatgaag 22377549  T
Q  112 ttacttctgaagttattcttttttg-----------tttattttaaattaaaaatgaagtt-aaagtgagtaaattagagtaaccgttgagggtaattat 199  Q
    |||||||||||||||||||||||||           ||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22377550 ttacttctgaagttattcttttttgttttttttgtttttttttttaaataaaaatgaagttaaaagtgagtaaattagagtaaccgttgagggtaattat 22377649  T
Q  200 ggaagtaaattaggctacattaaaacaaaagtattgactttattaata 247  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||    
T  22377650 ggaagtaaattatgctacaccaaaacaaaagtattgactttattaata 22377697  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 21116924 - 21116982
Alignment:
Q  189 agggtaattatggaagtaaattaggctacattaaaacaaaagtattgactttattaata 247  Q
    |||||| || ||||||  ||||||||||||  ||||||||||||||| |||||||||||    
T  21116924 agggtatttttggaagctaattaggctacaccaaaacaaaagtattgcctttattaata 21116982  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 41929656 - 41929532
Alignment:
Q  100 agttacatgaagttacttctgaagttattcttttttgtttatttt------aaattaaaaatgaagttaaagtgagtaaattagagtaaccgttgagggt 193  Q
    |||||| ||||||||| | ||||||||||||||||||||| ||||      ||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  41929656 agttacgtgaagttacatatgaagttattcttttttgttttttttttttttaaaataaaaatgaagttaaagtgagtaaattagagtaaccattgagggt 41929557  T
Q  194 aattatggaagtaaattaggctaca 218  Q
    |||||||||||||||||||||||||    
T  41929556 aattatggaagtaaattaggctaca 41929532  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 49985040 - 49985110
Alignment:
Q  290 taaaaataaaaggtttgacttatcaaccaatatgacctgggcttgactcagacttaggtaggcccagccgc 360  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  49985040 taaaaataaaaggtttgacttatcaaccaatatgacatgggcttgactcagacttatgtaggcccagccgc 49985110  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 49984669 - 49984710
Alignment:
Q  257 atttaaatattaaaagaagtatgactttagtaataaaaataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49984669 atttaaatattaaaagaagtatgactttagtaataaaaataa 49984710  T

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Target: scaffold0077 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 51094 - 51197
Alignment:
Q  119 tgaagttattcttttttgtttattttaa-attaaaaatgaagttaaag---tgagtaaattagagtaaccgttgagggtaattatggaagtaaattaggc 214  Q
    ||||||||||||||||| ||| |||||  | | |||||||||||||||   |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  51094 tgaagttattctttttttttttttttattagttaaaatgaagttaaagcagtgagtaaattagagtaaccgttgagggtaaatgtggaagtaaattaggc 51193  T
Q  215 taca 218  Q
    ||||    
T  51194 taca 51197  T

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Target: scaffold0077; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 60842 - 60945
Alignment:
Q  119 tgaagttattcttttttgtttattttaa-attaaaaatgaagttaaag---tgagtaaattagagtaaccgttgagggtaattatggaagtaaattaggc 214  Q
    ||||||||||||||||| ||| |||||  | | |||||||||||||||   |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  60842 tgaagttattctttttttttttttttattagttaaaatgaagttaaagcagtgagtaaattagagtaaccgttgagggtaaatgtggaagtaaattaggc 60941  T
Q  215 taca 218  Q
    ||||    
T  60942 taca 60945  T

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Target: scaffold0077; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 50741 - 50801
Alignment:
Q  14 gatggttgtaagttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgca 75  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  50741 gatggttgtaagttgcaattgtttcaaggtttaaac-tacctgcagttttctttttcttgca 50801  T

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Target: scaffold0077; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 60489 - 60549
Alignment:
Q  14 gatggttgtaagttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgca 75  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  60489 gatggttgtaagttgcaattgtttcaaggtttaaac-tacctgcagttttctttttcttgca 60549  T

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Target: scaffold0077; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 51339 - 51294
Alignment:
Q  173 attagagtaaccgttgagggtaattatggaagtaaattaggctaca 218  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  51339 attagagtaaccgttgagggtaaatgtggaagtaaattaggctaca 51294  T

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Target: scaffold0077; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 61087 - 61042
Alignment:
Q  173 attagagtaaccgttgagggtaattatggaagtaaattaggctaca 218  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  61087 attagagtaaccgttgagggtaaatgtggaagtaaattaggctaca 61042  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 36998839 - 36998879
Alignment:
Q  351 gcccagccgcagcagtggtcgcctttttgaccgccgcattg 391  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  36998839 gcccagccgcagcagtggtcgtctgtttgaccgccgcattg 36998879  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 23651619 - 23651578
Alignment:
Q  206 aaattaggctacattaaaacaaaagtattgactttattaata 247  Q
    |||||||||||||  ||||||||||||||| |||||||||||    
T  23651619 aaattaggctacaccaaaacaaaagtattgcctttattaata 23651578  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 80021 - 79980
Alignment:
Q  206 aaattaggctacattaaaacaaaagtattgactttattaata 247  Q
    |||||||||||||  ||||||||||||||| |||||||||||    
T  80021 aaattaggctacaccaaaacaaaagtattgcctttattaata 79980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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