View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6028_low_12 (Length: 213)
Name: NF6028_low_12
Description: NF6028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6028_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 37074512 - 37074692
Alignment:
| Q |
12 |
cagagacacaagctgaacaacatctcaactacaaggtaaaactcttgttccacctcttacttacatttcattcttcttcaactgcttctaaacttgttac |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37074512 |
cagaaacacaagctgaacaacatctcaactacaaggtaaa-cacttgttccacctcttacttacatttcattcttcttcaactgcttctaaacttgttac |
37074610 |
T |
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| Q |
112 |
ttaccattttgttttgtctcagacaactgtgttgaaagtctccatccactgcgtaggctgcaagagaaaagtacacaaaattcttca |
198 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37074611 |
ttaccatttt-----gtctcagacaactgtgttgaaagtctccatccactgcgtaggctgcaagagaaaagtacacaaaattcttca |
37074692 |
T |
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