View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6028_low_3 (Length: 419)
Name: NF6028_low_3
Description: NF6028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6028_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 30877447 - 30877849
Alignment:
| Q |
17 |
acttaccttataagtgcttaatttaggttttatccaaacatggagttaaattacttttctcaatgattaaagaaaggaagatgtaaaagcattatgttga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
30877447 |
acttaccttataagtgcttaatttaggttttatccaaacatggagttaaattacttttctgaatgattaaagaaaggatgatgtaaaagcattatgttga |
30877546 |
T |
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| Q |
117 |
actaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30877547 |
actaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttctgcctcactatgattcttcaaa |
30877646 |
T |
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| Q |
217 |
gcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877647 |
gcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggttcctctacaagctcccctctctccctatccaaaaccagagagaaac |
30877746 |
T |
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| Q |
317 |
ttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttactaattctctcagtagcatctccaaatatatcataaccttccatttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877747 |
ttgaaccatacccacttccaattacctcattgtttacttcaaaaccatttttaccaattctctcagtagcatctccaaatatatcataaccttccatttc |
30877846 |
T |
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| Q |
417 |
cat |
419 |
Q |
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| T |
30877847 |
cat |
30877849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 113 - 341
Target Start/End: Original strand, 39332708 - 39332933
Alignment:
| Q |
113 |
ttgaactaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattctt |
212 |
Q |
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||||||||||||| ||| |||||||| |||| |||||| ||||||||||||| |||||| || ||||||||||| ||||| || |||||||||||||| |
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| T |
39332708 |
ttgaactaaccttattagcccctggaataacactacgaagtgtatcaagatgtgaattaattcttgctcttctccttctttctgcttcactatgattctt |
39332807 |
T |
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| Q |
213 |
caaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagag |
312 |
Q |
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| T |
39332808 |
caaagcttcaatacttctctc---aggtgatacaccctttctttccaatttcacagctgcctccacaagctctcctttttctctatctaaaaccagtgaa |
39332904 |
T |
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| Q |
313 |
aaacttgaaccatacccacttccaattac |
341 |
Q |
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|| ||||||||| ||| ||||| |||| |
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| T |
39332905 |
gaagatgaaccatatccatttccatttac |
39332933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 341
Target Start/End: Original strand, 30203571 - 30203705
Alignment:
| Q |
204 |
atgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaa |
303 |
Q |
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|||||||||||||||||||| ||||||||| || ||||||||||||| ||| | ||| |||| |||||| |||| ||| ||| | || ||||||||| |
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| T |
30203571 |
atgattcttcaaagcttcaatacttctctc---aggtgacacaccctttctttctaatttcacagttgcctccacaaactctcctttttctctatccaaa |
30203667 |
T |
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| Q |
304 |
accagagagaaacttgaaccatacccacttccaattac |
341 |
Q |
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| T |
30203668 |
accagcgaagaagatgaaccatatccatttccatttac |
30203705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 141 - 341
Target Start/End: Original strand, 12102483 - 12102677
Alignment:
| Q |
141 |
gacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaagcttcaacacttctctctgtagtg |
240 |
Q |
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||||| |||||| |||||||||||| |||||| || |||||||||||| || || ||||||||||||||||||||||| | ||||||| | || |
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| T |
12102483 |
gacactacgaagtgtatcaagatgtaaattaattcttgctcttctcctc---tctgcttcactatgattcttcaaagcttcgatacttctccc---aggt |
12102576 |
T |
|
| Q |
241 |
gacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccatacccacttccaatta |
340 |
Q |
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| T |
12102577 |
gacacaccctttctttctaatttcacagctgcctccacaagctctcctttttctctatccaaaaccagtgaagaagatgaaccatatccacttccattta |
12102676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 333
Target Start/End: Original strand, 17146474 - 17146603
Alignment:
| Q |
199 |
tcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctat |
298 |
Q |
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||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||| | ||| |||| |||||| ||||||| ||| | || |||| |
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| T |
17146474 |
tcactatgattcttcaaagcttcaatacttctctcag--gtg---acaccctttctttctaatttcacagctgcctccgcaagctctcctttttctctat |
17146568 |
T |
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| Q |
299 |
ccaaaaccagagagaaacttgaaccatacccactt |
333 |
Q |
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|||||||||| || || ||||||||| |||||| |
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| T |
17146569 |
ccaaaaccagtgaagaagatgaaccatatccactt |
17146603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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