View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6028_low_6 (Length: 353)
Name: NF6028_low_6
Description: NF6028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6028_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 33138072 - 33138394
Alignment:
| Q |
18 |
aagtatactataacaaaagaaatgttgcaatataagtatttatatacaacaacatacgagaaataaaaaatactaaacaataatgactggttgcaaatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33138072 |
aagtatactataacaaaagaaatgttgcaatctaagcatttatatactagaacatacgagaaataaaaaatactaaacaataatgaccggttgcaaatga |
33138171 |
T |
|
| Q |
118 |
gatgaattaggtataaaggaaattttactcttaacatattatttaccattataagcaacataattannnnnnnnaagaagtgtacataactcaaacgaga |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
33138172 |
ggtgaattaggtataaaggaaattttactcttaacatattatttaccattataagcaacataactattttttt-aagaagtgtacataactcaaacgaga |
33138270 |
T |
|
| Q |
218 |
cggatgtaggagataaaaatcttgatctatagttgttcataaaacataaatgtgaaacaatcacaacatttgtaatacaatctacatgtaacattaatga |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33138271 |
cggatgtaggagatcaaaatcttgatctatagttgttcataaaacataaatgtgaaacaatcacaacatttgtaatacaatctacatgtaacattaatga |
33138370 |
T |
|
| Q |
318 |
gtaatgaactatttttataatttt |
341 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33138371 |
gtaatgaactatttttataatttt |
33138394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 33143686 - 33144015
Alignment:
| Q |
18 |
aagtatactataacaaaagaaatgttgcaatataagtatttatatacaacaacatacgagaaataaaaaatactaaacaataatgac--tggttgcaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
33143686 |
aagtatactataacaaaagaaatgctgcaatcgaaacatttatatacaacaacatacaagaaataaaaaatactaaataataatgagagtggttgtaaat |
33143785 |
T |
|
| Q |
116 |
gagatgaattaggtataaaggaaattttactcttaacatattatttaccattataagcaacataattannnnnnnn--aagaagtgtacataactcaaac |
213 |
Q |
| |
|
| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
33143786 |
atggtgaattgggtataaatgaaattttactcttaacatattatttaccattataagcaacataactatttcttttttaagaagtgtacatatctcaaac |
33143885 |
T |
|
| Q |
214 |
gagacggatgtaggagataaaaatcttgatctatagttgttcataaaacataaatgtgaaacaatcacaacatttgtaatacaatc--tacatgtaacat |
311 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33143886 |
gagacggatgtaggagatcaaaattttgatctatagttgttcataaaacaaaaatgtgaaacaatcacaacatttgtaatacaatctatacatgtaacat |
33143985 |
T |
|
| Q |
312 |
taatgagtaatgaactatttttataatttt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33143986 |
taatgagtaatgaactatttttataatttt |
33144015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University