View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6028_low_9 (Length: 241)
Name: NF6028_low_9
Description: NF6028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6028_low_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 4261263 - 4261503
Alignment:
| Q |
1 |
ttgaaggaaggcctaaccaagcatagacttatattgtttagaaattgacctcattctattgacatttggataataaattattacctccaccacctgtcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4261263 |
ttgaaggaaggcctaaccaagcatagacttatattgtttagaaattgacctcattctattgacatttggataataaattattacctccaccacctgtcct |
4261362 |
T |
|
| Q |
101 |
cactatagttcctcctcttggactgtcagttatgtttgtaatcccggccagcgttaatgccactgaattagcccatcccatatgtccatccattcttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4261363 |
cactatagttcctcctcttggactgtcagttatgtttgtaatcccggccagcgttaatgccactgaattagcccatcccatatgtccatccattcttgat |
4261462 |
T |
|
| Q |
201 |
aaccaaacctgcttgtatatttcaattaagatctctctgat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4261463 |
aaccaaacctgcttgtatatttcaattaagatctctctgat |
4261503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University