View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_high_13 (Length: 332)
Name: NF6029_high_13
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 25 - 318
Target Start/End: Original strand, 1646751 - 1647040
Alignment:
| Q |
25 |
acaatttaaaatcctcttgcatgctttagtttattcattattttcttcaaaagaatcagttgttttggtgttgaagtacttcctttctatccacaaggaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
1646751 |
acaatttaaaatcctcttgcatgctttagtttattcattattttcttcaaaagactcagttgttttggtgttgaattccttcctttctatccacaaggaa |
1646850 |
T |
|
| Q |
125 |
caatgtcagctatgcttgcaggtacctcctctgccactttcaccacaagaagtaaccactccatcaaaaacactcacatcagaccttccaagacactcac |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1646851 |
caatgtcagctatgcttgcaggtacctcctctgccactttcaccacaaggagtaaccactccatcaaaaacactcacatcagaccttccaagacactcac |
1646950 |
T |
|
| Q |
225 |
tcctccatgtcaggtactcttcttttctttgcatgattacctgggtcgtcggtaagtaagtaaagtctgatcaaatatcgttctggtcaggatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1646951 |
tcctccatgtcaggtactcttcttttctttgcatgattacctg----gtcggtaagtaagtaaagtctgatcaaatatcgttctggtcaggatt |
1647040 |
T |
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