View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_high_14 (Length: 328)
Name: NF6029_high_14
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 314
Target Start/End: Complemental strand, 43662381 - 43662082
Alignment:
| Q |
14 |
atatattgaggagggatattcaaagatgatggatgcatgctccaccagttagggttcccagccatcatttgctacaatggatcatgagtctcatgatata |
113 |
Q |
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| T |
43662381 |
atatattgaggagggatattcaaagatgatggatgcatgctccaccagttagggttcccagccatcatttgctacaatggatcatgagtctcatgatata |
43662282 |
T |
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| Q |
114 |
tgtgtaagaaggaattatttattttttcaacttcnnnnnnnnnnnnntaagctccctaagaaatgaaatttttgtaaactacttttttctcttacttttc |
213 |
Q |
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| T |
43662281 |
tgtgtaagaaggaattatttattttttcaactt-aaaaaaataaaaataagctccctaagaaatgaaatttttgtaaactgcttttttctcttacttttc |
43662183 |
T |
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| Q |
214 |
taactttcacctttgtgatggtatttccttgtatgtgcaaccaaacaagactttggataaaggtttgaagagttgtgttttgctttcttactagctatgt |
313 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43662182 |
taactttcacctttgtgatgatatttccttgtatgtgcaaccaaacaagactttggataaaggtttgaagagttgtgttttgctttcttactagctatgt |
43662083 |
T |
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