View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6029_high_17 (Length: 285)
Name: NF6029_high_17
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_high_17 |
 | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 28579893 - 28580141
Alignment:
| Q |
18 |
ccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactcgc |
117 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28579893 |
ccatgtttttctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatactcct |
28579992 |
T |
|
| Q |
118 |
agtaatatatatctgtgcgtgcgcgtggagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgca |
217 |
Q |
| |
|
||||| ||||| | || ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28579993 |
agtaaattatatattcaaatg----tggagagggtacgtattaaactaacctgcatttacgtaatggcctccttgtctcagcaagcggaatgcaagtgca |
28580088 |
T |
|
| Q |
218 |
acttgatagagttcatggctactcataaaatcaataggattggtgttcaatat |
270 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||||| |||||||||| |
|
|
| T |
28580089 |
acttcatagagttcatggctacttacaaaatcaataggattgttgttcaatat |
28580141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 26315886 - 26316146
Alignment:
| Q |
9 |
acatcatcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaat--tatagttagtcactatattactaac |
106 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
26315886 |
acatcctcgccatgtttttcttcgaacattcttttgttacacttcaagctgtcaaataaatctgcaaaacaatattatagttagtcactatattactaac |
26315985 |
T |
|
| Q |
107 |
taaa-tactcgcagtaatatatatctgtgcgtgcgcgtggagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcgg |
205 |
Q |
| |
|
|||| |||| ||||| |||||| | || ||||||| ||| ||||||||| ||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
26315986 |
taaaatacttatagtaaaatatatattcaaatg----tggagagtgtaagtattaaactaacctgcatttacataatgtcctccttgtctgagcaagcgg |
26316081 |
T |
|
| Q |
206 |
aatgcaagtgcaacttgatagagttcatggctactcataaaatcaataggattggtgttcaatat |
270 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
26316082 |
aatgcaagtgcaacttcgtagagttcatggatactcataaaatcattaggattggtgttcaatat |
26316146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 28574838 - 28575088
Alignment:
| Q |
15 |
tcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaactaaatact |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28574838 |
tcaccatgtttttcttcaaacattcttttgttgcacttcaagctgtcaaataaatctacacaacaattatagttagtcactatatt----actaaatact |
28574933 |
T |
|
| Q |
115 |
cgcagtaatatatatctgtgcgtgcgcgtggagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagt |
214 |
Q |
| |
|
| | || || | | ||| || ||||||||||| ||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28574934 |
c-ctatagtaaaattatgtattcaaatgtagagagggtacgaattaaactaacctgcattgacatagtggcctccttgtctcagcaagcggaatgcaagt |
28575032 |
T |
|
| Q |
215 |
gcaacttgatagagttcatggctactcataaaatcaataggattggtgttcaatat |
270 |
Q |
| |
|
| || || |||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
28575033 |
gaaaattcatagagttcatggctattcacaaaatcaataggattggtgttcaatat |
28575088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 28586030 - 28586296
Alignment:
| Q |
8 |
gacatcatcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaact |
107 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28586030 |
gacatcctcgccatgtttttctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttggtcactatattactaact |
28586129 |
T |
|
| Q |
108 |
aaatactc--gcagtaata-tatatctgtgcgtgcgc---gtggagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaa |
201 |
Q |
| |
|
|||||||| ||||| | ||||| | | | | | |||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
28586130 |
aaatactcctatagtaaaattatatatatacagacacacacacgagaaggtacgcattaaacaaacctgcatttacgtaatggcctccttgtctcagcaa |
28586229 |
T |
|
| Q |
202 |
gcggaatgcaagtgcaacttgatagagttcatggctactcataaaatcaataggattggtgttcaat |
268 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
28586230 |
gcggaatgcaagtgcaacttcatagatttcatggctactcgcaaaatcaattgaattggtgttcaat |
28586296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 28568130 - 28568248
Alignment:
| Q |
155 |
gtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatca---a |
251 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
28568130 |
gtattaaacaaacctgcatttacgtaatggcctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaatta |
28568229 |
T |
|
| Q |
252 |
taggattggtgttcaatat |
270 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28568230 |
taggattggtgttcaatat |
28568248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 28568004 - 28568100
Alignment:
| Q |
9 |
acatcatcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaa |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
28568004 |
acatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcattttattactaa |
28568100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 165 - 270
Target Start/End: Original strand, 20618387 - 20618492
Alignment:
| Q |
165 |
aacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatcaataggattggtgtt |
264 |
Q |
| |
|
||||||| || ||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| | ||||||||| |||||| || | |
|
|
| T |
20618387 |
aacctgcattgacataatagcctccttgtctgagcaaacggaatgcaagtgcaacttcatagagttcatggctactaacaaaatcaattggattgctgct |
20618486 |
T |
|
| Q |
265 |
caatat |
270 |
Q |
| |
|
|||||| |
|
|
| T |
20618487 |
caatat |
20618492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 138 - 270
Target Start/End: Original strand, 24071637 - 24071769
Alignment:
| Q |
138 |
gcgcgtggagagggtacgtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggct |
237 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24071637 |
gcgcgtggagagggtacgttttaaacatacctgcatttacataatggcctccttgtctgagcaagcggaatgcaagtgcaacttgatagagttcatggct |
24071736 |
T |
|
| Q |
238 |
actcataaaatcaataggattggtgttcaatat |
270 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
24071737 |
actcacaaaatcaataggattggtgttcaatat |
24071769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 24071452 - 24071572
Alignment:
| Q |
9 |
acatcatcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaacta |
108 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24071452 |
acatcctcaccatgtgtttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactacattactaacta |
24071551 |
T |
|
| Q |
109 |
aatactcgcagtaatatatat |
129 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
24071552 |
aatactcccagtaatatatat |
24071572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 24079284 - 24079216
Alignment:
| Q |
9 |
acatcatcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaa |
77 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24079284 |
acatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaa |
24079216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 155 - 270
Target Start/End: Complemental strand, 4959 - 4841
Alignment:
| Q |
155 |
gtattaaacaaacctgcgtttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatca---a |
251 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
4959 |
gtattaaacaaacctgcatttacgtaatggcctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaatta |
4860 |
T |
|
| Q |
252 |
taggattggtgttcaatat |
270 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4859 |
taggattggtgttcaatat |
4841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 4737 - 4637
Alignment:
| Q |
173 |
tttacataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggctactcataaaatca---ataggattggtgttcaata |
269 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
4737 |
tttacgtaatggcctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaattataggattggtgttcaata |
4638 |
T |
|
| Q |
270 |
t |
270 |
Q |
| |
|
| |
|
|
| T |
4637 |
t |
4637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 2600881 - 2600819
Alignment:
| Q |
176 |
acataatggcctccttgtctcagcaagcggaatgcaagtgcaacttgatagagttcatggcta |
238 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||| ||| ||||||| || ||||||||||||| |
|
|
| T |
2600881 |
acatagtggcctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggcta |
2600819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University