View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6029_high_19 (Length: 261)
Name: NF6029_high_19
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 559620 - 559428
Alignment:
| Q |
18 |
acaaagaacatatccaaccaaagatatagcatatcatgtgtcttcactctatgtttgacaacttattcgagagaaaaggaaaagatttaagattatctca |
117 |
Q |
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| T |
559620 |
acaaagaacatatccaaccaaagatatagcatatcatgtgtcttcactctatgtttgacaacttattcaagagaaaaagaaaagatttaagattatctca |
559521 |
T |
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| Q |
118 |
attgtgtatatgaaaaatatgatgttgatttcaagagagaaaaatttgaatcaatgttgtgtgaattcttttttatcttctttttctgatgtg |
210 |
Q |
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| T |
559520 |
attgtgtatatgaaaaatatgatgttgatttcaagagagaaaaatttgaatcaatgttgtgtgaattcttttttatcttctttttctgatgtg |
559428 |
T |
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Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 557933 - 557743
Alignment:
| Q |
18 |
acaaagaacatatccaaccaaagatatagcatatcatgtgtcttcactctatgtttgacaacttattcgagagaaaaggaaaagatttaagattatctca |
117 |
Q |
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| T |
557933 |
acaaagaacatatcgaaccaaagttatagcatct--tgtatctccactttatgtttgacaaattattcgagagaaaa----aagatttaagattgtctca |
557840 |
T |
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| Q |
118 |
attgtgtatatgaaaaatatgatg-ttgatttcaagagag--aaaaatttgaatca--atgttgtgtgaattcttttttatcttctttttctgatgtg |
210 |
Q |
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| T |
557839 |
attgtgtatatgaaaaatattatgctagatttcaagagagataaaaatttgaatcaatatgttgtgttaacttctttttatcctc-ttttctgatgtg |
557743 |
T |
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