View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6029_high_23 (Length: 254)
Name: NF6029_high_23
Description: NF6029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6029_high_23 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 29050437 - 29050679
Alignment:
| Q |
12 |
agagataagtgaatgggaatgtgatgcacttgataaagatcaacacaccatgagttgactcttgttgacccacttggaaaaagaccagcattgctcatgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29050437 |
agagataagtgaatgggaatgtgatgcacttgataaagatcaacacaccatgagttgactcttgttgacccacttggaaaaagaccagcattgctcatgt |
29050536 |
T |
|
| Q |
112 |
tgtaaaaagagtgaaaaaaggttctgtgtatttggaaggattgtgacaatgtgttaatgtgcaactcagataccagacaacatatccttaactatgttgt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29050537 |
tgtaaaaagagtgaaaaaaggttctgtgtatttggaaggattgtgacaatgtgttaatgtgcaactcagataccagacaacatatccttaactatgttgt |
29050636 |
T |
|
| Q |
212 |
ctctcaagttcacttaacgaatgtacatgaaacaactttggtc |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29050637 |
ctctcaagttcacttaacgaatgtacatgaaacaactttggtc |
29050679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 29053627 - 29053854
Alignment:
| Q |
14 |
agataagtgaatgggaatgtgatgcacttgataaagatcaacacaccatgagttgactcttgttgacccacttggaaaaagaccagcattgctcatgttg |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
29053627 |
agataagtgaatgggaatttgatgcacttgataaagatcaactccccatgaattgactcttgttgacccactgggaaaaagaccaacattactcatgttg |
29053726 |
T |
|
| Q |
114 |
taaaaagagtg-aaaaaaggttctgtgtatttggaaggattgtgacaatgtgttaatgtgcaactcagataccagacaacatatccttaactatgttgtc |
212 |
Q |
| |
|
||||||||||| |||||| ||| |||||||| ||||||| ||||||| ||| | ||| |||||| |||||||||||| |||||||||||| |||||| |
|
|
| T |
29053727 |
taaaaagagtgaaaaaaatgttatgtgtattaggaaggagtgtgacactgt----acgtgtaactcatataccagacaacttatccttaactaggttgtc |
29053822 |
T |
|
| Q |
213 |
tctcaagttcacttaacgaatgtacatgaaac |
244 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
29053823 |
tctcaagttcagttaacgaatgtacatgaaac |
29053854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University